Browse Element(s) Details


Os.15939.1.S1_at

Description gb:AK120616.1
DB_XREF= gi:37990239
TID=Os.15939.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15939 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044K11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152B11, full insert sequence.
FL= gb:AK073479.1 gb:AK120616.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5367011/11ENTH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53640Os.1986.1.S1_at11/111+31145840..31150093retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g53650Os.29084.1.S1_at11/111+31151537..31152517CCCH transcription factor, putative, expressed
LOC_Os01g53660Os.32787.3.S1_s_at11/111+31155551..31158865calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g53660Os.32787.2.S1_x_at10/111+31155551..31158865calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g53670Os.15939.1.S2_at11/111+31159644..31163582ENTH domain containing protein, expressed
LOC_Os01g53670Os.15939.1.S1_at11/111+31159644..31163582ENTH domain containing protein, expressed
LOC_Os01g53670OsAffx.9454.1.S1_x_at5/111+31159644..31163582ENTH domain containing protein, expressed
LOC_Os01g53680Os.1991.1.S1_at11/111+31166981..31168639pyrophosphate-dependent phosphofructo-1-kinase, putative, expressed
LOC_Os01g53690OsAffx.2324.1.S1_at11/111+31173765..31174342hypothetical protein
LOC_Os01g53700Os.12235.1.S1_at10/111+31177491..31183075Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15939.1.S1_at--1140--651Chr01:31160413..31160437 (25 bp)
ATGAATGTGTTATGGCAACGCCTGG
LOC_Os01g53670
Os.15939.1.S1_at--627--2191Chr01:31160441..31160465 (25 bp)
ACACACTTGCGAATTGGCGTCACGT
LOC_Os01g53670
Os.15939.1.S1_at--903--9771Chr01:31160550..31160572 (23 bp)
TAAGGCGTTGGCTGTGATCGAGTAC
LOC_Os01g53670
Os.15939.1.S1_at--484--5091Chr01:31160586..31160610 (25 bp)
GCACCGAACGTGCAGCTGATGGCAT
LOC_Os01g53670
Os.15939.1.S1_at--41--311Chr01:31160619..31160728 (25 bp)
ATAGCTCACGAATTGCAAAACTCAC
LOC_Os01g53670
Os.15939.1.S1_at--950--2791Chr01:31160758..31160782 (25 bp)
AAGATGTTGGGCTCAATGTGCGTAA
LOC_Os01g53670
Os.15939.1.S1_at--930--8311Chr01:31160786..31160810 (25 bp)
GGCTGAAGCTGTTCTAGCAATTTTG
LOC_Os01g53670
Os.15939.1.S1_at--1098--6871Chr01:31160952..31160976 (25 bp)
GTATTTTGGCTTATCATCAACTGGA
LOC_Os01g53670
Os.15939.1.S1_at--740--4111Chr01:31160981..31161005 (25 bp)
CGCACAAATCGAGCGCAGCATCATT
LOC_Os01g53670
Os.15939.1.S1_at--365--10871Chr01:31161005..31161029 (25 bp)
TTGGCAGTGGCAGCTACTCATCTGG
LOC_Os01g53670
Os.15939.1.S1_at--528--4851Chr01:31161017..31161041 (25 bp)
GCTACTCATCTGGTAGCCACTATGG
LOC_Os01g53670
Target Sequence 
ATGAATGTGTTATGGCAACGCCTGGGGAACACACTTGCGAATTGGCGTCACGTGTATAAGGCGTTGGCTGTGATCGAGTA
CCNTCTAGCTAATGGCACCGAACGTGCAGCTGATGGCATTGTTGACAATAGCTCACGAATTGCAAAACTCACAAGATTTG
AGTATTTGGAGCCTAATGGAAAAGATGTTGGGCTCAATGTGCGTAAGAAGGCTGAAGCTGTTCTAGCAATTTTGGATGAC
AGGGAGAAGCTTCAAGAGGTCANAGAGAAGGCTGCCGTTACTANAGACAAGTATTTTGGCTTATCATCAACTGGAATAAC
GCACAAATCGAGCGCAGCATCATTTGGCAGTGGCAGCTACTCATCTGGTAGCCACTATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis