Browse Element(s) Details


Os.15979.1.A1_at

Description gb:AK063373.1
DB_XREF= gi:32973391
TID=Os.15979.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-E07, full insert sequence.
FL= gb:AK063373.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0588011/11RNA polymerase Rpb1, domain 2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05840Os.10052.1.S1_at11/112+2876557..2882175expressed protein
LOC_Os02g05850NANA2+2887326..2892035transposon protein, putative, unclassified
LOC_Os02g05860NANA2+2893006..2895238retrotransposon protein, putative, unclassified
LOC_Os02g05870Os.47932.1.S1_at10/112+2898895..2903749expressed protein
LOC_Os02g05870Os.23622.1.A1_at1/112+2898895..2903749expressed protein
LOC_Os02g05880Os.15979.1.A1_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05880OsAffx.24118.1.S1_x_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05880Os.53690.1.S1_x_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05890Os.9792.1.S1_at11/112+2922459..2925071expressed protein
LOC_Os02g05900Os.23551.1.S1_at10/112+2928920..2932223ternary complex factor MIP1, putative, expressed
LOC_Os02g05910NANA2+2933950..2937377Leucine Rich Repeat family protein, expressed
LOC_Os02g05920Os.49104.1.A1_at11/112+2938044..2941646Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0006350biological_processtranscription
GO:0035194biological_processRNA-mediated posttranscriptional gene silencing
GO:0005634cellular_componentnucleus
GO:0030880cellular_componentRNA polymerase complex
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15979.1.A1_at--437--1051Chr02:2904879..2904903 (25 bp)
AGGGTTAGCAGTCTTTAGGTCTCAC
LOC_Os02g05880
Os.15979.1.A1_at--959--431Chr02:2904769..2904793 (25 bp)
ATCTTTTTTGTCTTTCCAGTATGGT
LOC_Os02g05880
Os.15979.1.A1_at--940--9011Chr02:2904679..2904703 (25 bp)
TGCAAGGCACAGAGCTCTCGCTGGT
LOC_Os02g05880
Os.15979.1.A1_at--241--9351Chr02:2904662..2904686 (25 bp)
TCGCTGGTGCTGTTTCATTTTGGAT
LOC_Os02g05880
Os.15979.1.A1_at--1103--2791Chr02:2904587..2904611 (25 bp)
AAGATGGATTCCCTGCTGTGAACAA
LOC_Os02g05880
Os.15979.1.A1_at--584--3471Chr02:2904561..2904585 (25 bp)
CAGGTGGCCTTGCATGAATTCATTC
LOC_Os02g05880
Os.15979.1.A1_at--617--2111Chr02:2904531..2904555 (25 bp)
ACATGAGGTCTTGCTGGTGACGCCA
LOC_Os02g05880
Os.15979.1.A1_at--526--4711Chr02:2904519..2904543 (25 bp)
GCTGGTGACGCCACAAATTTGGTTT
LOC_Os02g05880
Os.15979.1.A1_at--756--7431Chr02:2904491..2904515 (25 bp)
GTGTTTGCACTGAGCTGGACCAATC
LOC_Os02g05880
Os.15979.1.A1_at--943--6871Chr02:2904421..2904445 (25 bp)
GTATTCTGTCATTTCATTACCAAGA
LOC_Os02g05880
Os.15979.1.A1_at--15--9071Chr02:2904369..2904393 (25 bp)
TGCTTAAATGCATCCGTCAACCGTA
LOC_Os02g05880
Target Sequence 
AGGGTTAGCAGTCTTTAGGTCTCACTNTTCCAGACGAACTCTGTAAATTCTGGATGTTAGTGAGCTGCANCCCGTAGCTT
AAACTCGTTTTTACCCTCTCTTTTTTTTTTATCTTTTTTGTCTTTCCAGTATGGTTATTTGGTTAGTCCAATGCAAGCCG
ATTNTGCGAGGCCGTGCCGAATNTGATGATTTTGTTGTTNTGCAAGGCACAGAGCTCTCGCTGGTGCTGTTTCATTTTGG
ATGCTGTTACAGGGTTTTGTAAAGACNCTGAAACTACCATGCGAATCAGCAAAAGATGGATTCCCTGCTGTGAACAAGCA
GGTGGCCTTGCATGAATTCATTCNTCAAACATGAGGTCTTGCTGGTGACGCCACAAATTTGGTTTGATGTGTTTGCACTG
AGCTGGACCAATCTGTTCTTGAAATTTCTTCAGGTTGGTACAGAAAATAGGTAATATTGTATTCTGTCATTTCATTACCA
AGACCAGTGGTGTGAACAAGCTGGAGGCATTGCTTAAATGCATCCGTCAACCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15979.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis