Browse Element(s) Details


Os.16006.1.S1_s_at

Description gb:NM_190122.1
DB_XREF= gi:34907327
GEN=P0698A10.26
TID=Os.16006.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.16006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0698A10.26 (P0698A10.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0698A10.26 (P0698A10.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6553011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65470OsAffx.31174.5.S1_x_at11/111+38332742..38333489hypothetical protein
LOC_Os01g65470OsAffx.31174.4.S1_x_at5/111+38332742..38333489hypothetical protein
LOC_Os01g65480Os.8452.1.S1_at11/111+38336490..38339127DnaJ domain containing protein, expressed
LOC_Os01g65490Os.32122.1.S1_x_at11/111+38339648..38341148expressed protein
LOC_Os01g65490Os.32122.1.S1_at11/111+38339648..38341148expressed protein
LOC_Os01g65490Os.32122.2.S1_at1/111+38339648..38341148expressed protein
LOC_Os01g65500NANA1+38344981..38348540Chloride channel protein CLC-c, putative
LOC_Os01g65510Os.15941.2.S1_x_at11/111+38349637..38350989F-box domain containing protein, expressed
LOC_Os01g65510OsAffx.15285.1.S1_at1/111+38349637..38350989F-box domain containing protein, expressed
LOC_Os01g65520Os.26261.1.S1_at11/111+38353509..38357030membrane protein, putative, expressed
LOC_Os01g65530Os.16006.1.S1_s_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65530Os.10577.1.S1_x_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65530Os.16006.1.S1_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65540OsAffx.23926.2.S1_s_at11/111+38367749..38369468hypothetical protein
LOC_Os01g65540OsAffx.23926.2.S1_at7/111+38367749..38369468hypothetical protein
LOC_Os01g65550OsAffx.23927.2.S1_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65550OsAffx.23927.1.S1_x_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65550Os.14100.1.S1_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65560Os.42681.1.S1_at10/111+38382538..38384669SnRK1-interacting protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16006.1.S1_s_at--306--531Chr01:38359325..38359349 (25 bp)
ATCGCACAGTATGCTGTTCAACTTT
LOC_Os01g65530
Os.16006.1.S1_s_at--10--4731Chr01:38359337..38359361 (25 bp)
GCTGTTCAACTTTTTTCAGGACTTG
LOC_Os01g65530
Os.16006.1.S1_s_at--814--9631Chr01:38359352..38359376 (25 bp)
TCAGGACTTGTTCGGCTTTATGGTA
LOC_Os01g65530
Os.16006.1.S1_s_at--868--2171Chr01:38359379..38359710 (25 bp)
ACACTCAAATTTGCGATCTCTGGAC
LOC_Os01g65530
Os.16006.1.S1_s_at--818--6411Chr01:38359700..38359724 (25 bp)
GATCTCTGGACAAGACAAACCCTCA
LOC_Os01g65530
Os.16006.1.S1_s_at--990--5611Chr01:38359713..38359737 (25 bp)
GACAAACCCTCATCAAATGGCAATA
LOC_Os01g65530
Os.16006.1.S1_s_at--281--6331Chr01:38359830..38359854 (25 bp)
GATCCAATGGTAAATGGTGGGACAA
LOC_Os01g65530
Os.16006.1.S1_s_at--306--1331Chr01:38359854..38359878 (25 bp)
AGAGATTATGGCTTTTCAAACTATT
LOC_Os01g65530
Os.16006.1.S1_s_at--1019--1111Chr01:38359887..38360003 (25 bp)
AGTGCTAATCCCCAAGCATTACCAG
LOC_Os01g65530
Os.16006.1.S1_s_at--367--2711Chr01:38359993..38360016 (24 bp)
AAGCATTACCAGTTGGACCCGTGCA
LOC_Os01g65530
Os.16006.1.S1_s_at--855--10451Chr01:38359997..38360021 (25 bp)
TTACCAGTTGGACCCGTGCATAGCT
LOC_Os01g65530
Target Sequence 
ATCGCACAGTATGCTGTTCAACTTTTTTCAGGACTTGTTCGGCTTTATGGTAAAACACTCAAATTTGCGATCTCTGGACA
AGACAAACCCTCATCAAATGGCAATAATCCAGTAATGCCTAAACTCAATCCTGTACCATTACCAAAGCAGCCTCAGTTTG
TGNCATCATAGTGATATGCATGTATTGCATACCCCAGCGGATCCAATGGTAAATGGTGGGACAAGAGATTATGGCTTTTC
AAACTATTATCCTTATAGTGCTAATCCCCAAGCATTACCAGTTGGACCCGTGCATAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16006.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis