Browse Element(s) Details


Os.16031.1.S1_at

Description gb:AK100315.1
DB_XREF= gi:32985524
TID=Os.16031.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.16031 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078O21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078O21, full insert sequence.
FL= gb:AK100111.1 gb:AK100315.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2989011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29860OsAffx.12282.1.S1_at11/112+17748945..17750571hypothetical protein
LOC_Os02g29870Os.54691.1.S1_x_at4/112+17754217..17762511Zinc knuckle family protein
LOC_Os02g29870OsAffx.26095.1.S1_at1/112+17754217..17762511Zinc knuckle family protein
LOC_Os02g29880OsAffx.8602.1.S1_x_at4/112+17764546..17767870retrotransposon protein, putative, unclassified
LOC_Os02g29880Os.46735.1.S1_at2/112+17764546..17767870retrotransposon protein, putative, unclassified
LOC_Os02g29880OsAffx.8602.1.S1_s_at1/112+17764546..17767870retrotransposon protein, putative, unclassified
LOC_Os02g29890Os.16031.1.S1_at11/112+17775171..17779646expressed protein
LOC_Os02g29900OsAffx.12283.1.S1_at11/112+17783307..17783663hypothetical protein
LOC_Os02g29910OsAffx.12284.1.S1_at11/112+17785321..17785560hypothetical protein
LOC_Os02g29910OsAffx.12284.1.S1_x_at11/112+17785321..17785560hypothetical protein
LOC_Os02g29920OsAffx.18122.1.S1_x_at1/112+17786702..17788467transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29930Os.10827.1.S1_x_at6/112+17789041..17790381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29930Os.46055.2.S1_x_at5/112+17789041..17790381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29940NANA2+17790935..17791576hypothetical protein
LOC_Os02g29950OsAffx.25936.7.S1_s_at11/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29950OsAffx.25936.1.S1_s_at11/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29950OsAffx.25936.2.S1_x_at8/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29950OsAffx.25936.5.S1_x_at4/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29950OsAffx.25936.1.S1_at1/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29960Os.18238.1.S1_at11/112+17799630..17803154Cytochrome P450 family protein, expressed
LOC_Os02g29960OsAffx.24503.1.S1_x_at11/112+17799630..17803154Cytochrome P450 family protein, expressed
LOC_Os02g29970OsAffx.24504.1.S1_at11/112+17804198..17804632hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16031.1.S1_at--1092--9911Chr02:17779072..17779096 (25 bp)
TACTGCAGCTCATGTTAGTGCGGAA
LOC_Os02g29890
Os.16031.1.S1_at--326--1471Chr02:17779115..17779139 (25 bp)
AGAATGGTCGTTCCATACCCTGTAT
LOC_Os02g29890
Os.16031.1.S1_at--673--1271Chr02:17779149..17779173 (25 bp)
AGATAATTTATTCGCCTGTCTCGTA
LOC_Os02g29890
Os.16031.1.S1_at--1118--2291Chr02:17779221..17779245 (25 bp)
AAAGGGTATTTCCATAGTCACAATC
LOC_Os02g29890
Os.16031.1.S1_at--312--1171Chr02:17779236..17779260 (25 bp)
AGTCACAATCTGCTGCTGATATCCT
LOC_Os02g29890
Os.16031.1.S1_at--1017--2291Chr02:17779277..17779301 (25 bp)
AAATGGTGTCGCCTTTGCACAAGAC
LOC_Os02g29890
Os.16031.1.S1_at--193--6431Chr02:17779311..17779335 (25 bp)
GATCTTCTGAGGATATCTGCAACAT
LOC_Os02g29890
Os.16031.1.S1_at--455--5711Chr02:17779492..17779516 (25 bp)
GACTAAATTATTTTGCGGGTGCTAT
LOC_Os02g29890
Os.16031.1.S1_at--1099--1111Chr02:17779523..17779547 (25 bp)
AGTGCACCTAGTTCTTGTAAATGTT
LOC_Os02g29890
Os.16031.1.S1_at--134--3291Chr02:17779565..17779589 (25 bp)
CAAACTTCAATCATGCTAGGCTGCA
LOC_Os02g29890
Os.16031.1.S1_at--699--1971Chr02:17779590..17779614 (25 bp)
ACTGCTGGGTGTTGATATGTTCGAT
LOC_Os02g29890
Target Sequence 
TACTGCAGCTCATGTTAGTGCGGAAGTACGATATGGAAGATCAAGAATGGTCGTTCCATACCCTGTATTGTTGTTGTAGA
TAATTTATTCGCCTGTCTCGTAAAAGGTCCATAACTTAGTATCCCCCTCCATCTTGCTCCATTTCATCTAAAGGGTATTT
CCATAGTCACAATCTGCTGCTGATATCCTCAACTTGGATTTCTGAAAATGGTGTCGCCTTTGCACAAGACTGCAGTAGAG
ATCTTCTGAGGATATCTGCAACATGATTTATTTTNNNNNNNGGCGAGTGCTNCTCTTAAGTCNTTGCTTTTNCTTCGGGT
CTCGNAGTGTGTGGTATAGTTGATCAATTTTTGGTCCTTTTGCTTTTTTGAAATTGTTCCAGAATGGATTTGTGATTNAG
AGGNNTGGTGTGGCAGAGTAGCATTTTGTTCTGACTAAATTATTTTGCGGGTGCTATGTTCCNAAGTGCACCTAGTTCTT
GTAAATGTTGTTCTTGTTCAGCTGTACAAACTTCAATCATGCTAGGCTGCAACTGCTGGGTGTTGATATGTTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis