Browse Element(s) Details


Os.16042.1.S2_at

Description gb:AK109642.1
DB_XREF= gi:32994851
TID=Os.16042.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16042 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-F01, full insert sequence.
FL= gb:AK109642.1 gb:AK108248.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4782011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47799NANA5+27305791..27307255NA
LOC_Os05g47810OsAffx.15139.1.S1_x_at10/115+27320305..27321335hypothetical protein
LOC_Os05g47820Os.16042.1.S1_at11/115+27329015..27331097expressed protein
LOC_Os05g47820Os.16042.1.S2_at11/115+27329015..27331097expressed protein
LOC_Os05g47830OsAffx.27360.1.S1_s_at11/115+27334665..27335802expressed protein
LOC_Os05g47830OsAffx.30025.1.S1_x_at1/115+27334665..27335802expressed protein
LOC_Os05g47840Os.53178.1.S1_s_at11/115+27339718..27341524IPP transferase family protein, expressed
LOC_Os05g47840Os.53178.1.S1_at11/115+27339718..27341524IPP transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16042.1.S2_at--1047--3471Chr05:27329565..27329589 (25 bp)
CAGGTATTGTACATGTCTTTCTTGA
LOC_Os05g47820
Os.16042.1.S2_at--249--31Chr05:27329527..27329551 (25 bp)
ATTGGCTTCCTGCTTTTTATCAGTA
LOC_Os05g47820
Os.16042.1.S2_at--220--7891Chr05:27329499..27329523 (25 bp)
GGTTACTTGACCATTCACTTCAGAC
LOC_Os05g47820
Os.16042.1.S2_at--338--7931Chr05:27329402..27329426 (25 bp)
GGATTCATGCGAACTCAGGACCATT
LOC_Os05g47820
Os.16042.1.S2_at--690--2491Chr05:27329367..27329391 (25 bp)
AACAGTACTCCAGATTCATGCTGAG
LOC_Os05g47820
Os.16042.1.S2_at--1074--6171Chr05:27329336..27329360 (25 bp)
GAGGAAACATTTACCCAATCAGGAA
LOC_Os05g47820
Os.16042.1.S2_at--176--9911Chr05:27329211..27329235 (25 bp)
TACTCGAATGTTTTGCTACCTTTGG
LOC_Os05g47820
Os.16042.1.S2_at--457--5571Chr05:27329175..27329199 (25 bp)
GAAAGTGACCCCTTAAACTATGACA
LOC_Os05g47820
Os.16042.1.S2_at--589--2531Chr05:27329160..27329184 (25 bp)
AACTATGACATTACAGATCCTGGGT
LOC_Os05g47820
Os.16042.1.S2_at--394--6431Chr05:27329057..27329081 (25 bp)
GATCTTGTTTGGATGAGCTCAACTG
LOC_Os05g47820
Os.16042.1.S2_at--328--2911Chr05:27329030..27329054 (25 bp)
AAGGAGTCAACGTGTCCCTTGGACA
LOC_Os05g47820
Target Sequence 
CAGGTATTGTACATGTCTTTCTTGATTTTTTTTTATGGATTGGCTTCCTGCTTTTTATCAGTATTGGTTACTTGACCATT
CACTTCAGACTGAACTATGTTTTTGAAGAAAGCAGAGGATTCATGCTCAGAAACTGAAGCAGAATCACTTGAAATGAATG
TTGGATTCATGCGAACTCAGGACCATTTGACTGTTCAAACAGTACTCCAGATTCATGCTGAGACTTCAGAGGAAACATTT
ACCCAATCAGGAAAAAAAACGCTGAGGTTTCAGAATGTGTAAACAGTTCCAAGGAGAGGGGAAATGACATGAGTAAGTCC
AAACCTCATGATTTGCCAATCATTATTCTGGTGTACTCGAATGTTTTGCTACCTTTGGTATTGATTGCTGAAAGTGACCC
CTTAAACTATGACATTACAGATCCTGGGTTTTACAACCCTTTTCCTTTGTCAACTCTTTTCTGTAGTTCACTTTTATCAT
TTGTGCTTGATGTCATAGTAGCACATTGATCTTGTTTGGATGAGCTCAACTGAAAAGGAGTCAACGTGTCCCTTGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16042.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis