Browse Element(s) Details


Os.16049.1.S1_at

Description gb:AK100026.1
DB_XREF= gi:32985235
TID=Os.16049.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16049 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146I06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146I06, full insert sequence.
FL= gb:AK100026.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3636011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36310OsAffx.18010.1.S1_at10/119+20959121..20960632hypothetical protein
LOC_Os09g36320Os.17034.1.S1_at11/119+20961747..20967032serine/threonine-protein kinase NAK, putative, expressed
LOC_Os09g36330OsAffx.6492.1.S1_at11/119+20969412..20970433hypothetical protein
LOC_Os09g36340OsAffx.6493.1.S1_at10/119+20971299..20974745HVA22-like protein i, putative
LOC_Os09g36350Os.6247.1.S1_at11/119+20975968..20980170Glycosyl hydrolase family 9 protein, expressed
LOC_Os09g36360Os.16049.1.S1_at11/119+20983249..20985898expressed protein
LOC_Os09g36370OsAffx.30150.5.S1_s_at11/119+20987969..20993985ER lumen protein retaining receptor containing protein, expressed
LOC_Os09g36380OsAffx.18011.1.S1_at11/119+20994752..20995183hypothetical protein
LOC_Os09g36390OsAffx.18012.1.S1_at11/119+20997164..20998417hypothetical protein
LOC_Os09g36400NANA9+21002611..21006961hypothetical protein
LOC_Os09g36410OsAffx.25007.2.S1_s_at10/119+21007532..21010930retrotransposon protein, putative, unclassified
LOC_Os09g36410OsAffx.25007.2.S1_at9/119+21007532..21010930retrotransposon protein, putative, unclassified
LOC_Os09g36410OsAffx.25007.1.S1_at4/119+21007532..21010930retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16049.1.S1_at--246--8931Chr09:20984862..20984886 (25 bp)
TGACGCTGCCTGAATCGGATTACAA
LOC_Os09g36360
Os.16049.1.S1_at--709--5731Chr09:20983734..20983758 (25 bp)
GACGGCAAAGTGATCTCTACCTCAA
LOC_Os09g36360
Os.16049.1.S1_at--372--9971Chr09:20983717..20983741 (25 bp)
TACCTCAAGTCAACCATGCATGCTA
LOC_Os09g36360
Os.16049.1.S1_at--650--5411Chr09:20983649..20983673 (25 bp)
GAAGCGTGTCTCTTTTGTCTGGCTA
LOC_Os09g36360
Os.16049.1.S1_at--1110--1851Chr09:20983534..20983558 (25 bp)
ACGAGCTGAATTTAGTCCTGGTGCA
LOC_Os09g36360
Os.16049.1.S1_at--294--8611Chr09:20983516..20983540 (25 bp)
TGGTGCAGGCATCCCAGAGATCTAT
LOC_Os09g36360
Os.16049.1.S1_at--666--431Chr09:20983497..20983521 (25 bp)
ATCTATGCCGCATCACTAAAGCTTG
LOC_Os09g36360
Os.16049.1.S1_at--161--1311Chr09:20983431..20983455 (25 bp)
AGATGGACCCTTTTTGTCTGGAGTA
LOC_Os09g36360
Os.16049.1.S1_at--503--9111Chr09:20983365..20983389 (25 bp)
TGCTGTAGACCCTGTATATTTCCCA
LOC_Os09g36360
Os.16049.1.S1_at--778--8511Chr09:20983336..20983360 (25 bp)
TGGACATAACGCTGCAACTCCTTAG
LOC_Os09g36360
Os.16049.1.S1_at--877--2531Chr09:20983321..20983345 (25 bp)
AACTCCTTAGGCTAGCTCATGTAAT
LOC_Os09g36360
Target Sequence 
TGACGCTGCCTGAATCGGATTACAACCGGAGGCTTGGAGTTTTCCAGGTAAGAGCAGAATTTCTATCANCAGACGGCAAA
GTGATCTCTACCTCAAGTCAACCATGCATGCTAAAGTTTAAGAGTGCCCATATGCACTTCATAGAAACTNTTNTGCGAAG
CGTGTCTCTTTTGTCTGGCTATTCCTCAGAATCTCAGGTCATAAGACTAAAAATGAGGGGCATTACAGAGGCTTCAGAAC
CAGTAATGGGAATAAGGATAATTCTTGAACAACGAGCTGAATTTAGTCCTGGTGCAGGCATCCCAGAGATCTATGCCGCA
TCACTAAAGCTTGAGGCAGAACTACCTCTGCTCAAGAGAATACTCTGGAACTGGAGATGGACCCTTTTTGTCTGGAGTAG
CATGGGGTTCTTTGTTTTTGAATTATTGCTGGCNNCTTATTTGCTGTAGACCCTGTATATTTCCCAGGAGTGGACATAAC
GCTGCAACTCCTTAGGCTAGCTCATGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis