Browse Element(s) Details


Os.16116.1.S1_at

Description gb:AK072905.1
DB_XREF= gi:32982928
TID=Os.16116.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16116 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023146J04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023146J04, full insert sequence.
FL= gb:AK072905.1 gb:AK121868.1 gb:AK065825.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4999211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49950Os.15803.1.S1_at11/112+30512193..30516546U-box domain containing protein, expressed
LOC_Os02g49960NANA2+30518796..30519533expressed protein
LOC_Os02g49970Os.54883.1.S1_at8/112+30522776..30525251ZIM motif family protein, expressed
LOC_Os02g49980Os.9111.1.S1_at10/112+30527553..30530507small GTP-binding protein domain containing protein, expressed
LOC_Os02g49986Os.7051.1.S1_at11/112+30533910..30535244ODORANT1 protein, putative, expressed
LOC_Os02g49992Os.16116.1.S1_at11/112+30536300..30547698expressed protein
LOC_Os02g49992Os.16116.1.S2_at11/112+30536300..30547698expressed protein
LOC_Os02g50000OsAffx.24802.1.S1_at11/112+30548534..30550383GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50010Os.14286.1.S1_at11/112+30551689..30555091APO protein 3, mitochondrial precursor, putative, expressed
LOC_Os02g50020NANA2+30555341..30557543hypothetical protein
LOC_Os02g50030OsAffx.24804.1.S1_at10/112+30559979..30560890hypothetical protein
LOC_Os02g50040Os.53973.1.S1_at11/112+30567534..30571392Endoglucanase 1 precursor, putative, expressed
LOC_Os02g50050OsAffx.3023.1.S1_at11/112+30571771..30572422expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16116.1.S1_at--953--6251Chr02:30543623..30543647 (25 bp)
GATGGGCATGTTTTGGGTTCTCTCC
LOC_Os02g49992
Os.16116.1.S1_at--414--9631Chr02:30543527..30543551 (25 bp)
TCAGGGACCCAATTTGCAGCCAAAT
LOC_Os02g49992
Os.16116.1.S1_at--508--2051Chr02:30543478..30543502 (25 bp)
ACTTATCCACTGTCTATGTCATTGC
LOC_Os02g49992
Os.16116.1.S1_at--117--771Chr02:30543463..30543487 (25 bp)
ATGTCATTGCTTTCTGGGTTGTCTA
LOC_Os02g49992
Os.16116.1.S1_at--1098--2511Chr02:30543423..30543447 (25 bp)
AACTTGCTTTCCAGCTTGAAGAGAC
LOC_Os02g49992
Os.16116.1.S1_at--959--10531Chr02:30542982..30543417 (25 bp)
TTCTTGGCCAGAATGTTCCTAGCAT
LOC_Os02g49992
Os.16116.1.S1_at--408--10451Chr02:30542937..30542961 (25 bp)
TTAGACTGCTGCTTATAACCCCTCA
LOC_Os02g49992
Os.16116.1.S1_at--371--10651Chr02:30542696..30542929 (25 bp)
TTCCGCCCGCATTTTACGACATTAA
LOC_Os02g49992
Os.16116.1.S1_at--601--2331Chr02:30542668..30542692 (25 bp)
AAAGATCTCCATCTATCCTGAGCAA
LOC_Os02g49992
Os.16116.1.S1_at--839--2271Chr02:30542645..30542669 (25 bp)
AAATCTGGTGTGTCTCTGCTCCTAC
LOC_Os02g49992
Os.16116.1.S1_at--988--131Chr02:30542608..30542632 (25 bp)
ATTACAGGCTACTTCCTCTATACAG
LOC_Os02g49992
Target Sequence 
GATGGGCATGTTTTGGGTTCTCTCCTTCACCATGGCACAACCAGCATGTGAAGCAGTCATGAACTGGTTTACATCAGTAG
GAGTAGCAGATTTAATTCAGGGACCCAATTTGCAGCCAAATGAAAGAATGACAATGATGCGTGAAACTTATCCACTGTCT
ATGTCATTGCTTTCTGGGTTGTCTATCAATCTATGTTTGAAACTTGCTTTCCAGCTTGAAGAGACCATATTTCTTGGCCA
GAATGTTCCTAGCATTGCTATAGTGGAAACCTATGTTAGACTGCTGCTTATAACCCCTCATTCATTGTTCCGCCCGCATT
TTACGACATTAACACAAAGATCTCCATCTATCCTGAGCAAATCTGGTGTGTCTCTGCTCCTACTTGAGATACTGAATTAC
AGGCTACTTCCTCTATACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis