Browse Element(s) Details


Os.16138.1.S1_s_at

Description gb:BI801697
DB_XREF= gi:16574401
DB_XREF=H057F12
CLONE=H057F12
TID=Os.16138.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.16138 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0218011/11Cytochrome P450 84A1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02150Os.16247.1.S1_s_at11/113+676538..687033Adaptin N terminal region family protein, expressed
LOC_Os03g02160Os.9553.1.S1_at11/113+695792..699149Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os03g02170Os.53878.1.S1_at11/113+699458..703572expressed protein
LOC_Os03g02180Os.16138.1.S1_s_at11/113+704561..706349Cytochrome P450 84A1, putative, expressed
LOC_Os03g02180OsAffx.12708.1.S1_x_at11/113+704561..706349Cytochrome P450 84A1, putative, expressed
LOC_Os03g02190Os.50750.1.S1_at11/113+710833..712592Protein kinase domain containing protein, expressed
LOC_Os03g02200Os.2298.1.S1_at11/113+714528..718122Thymidine kinase, putative, expressed
LOC_Os03g02200OsAffx.31822.1.A1_at3/113+714528..718122Thymidine kinase, putative, expressed
LOC_Os03g02210Os.56285.1.S1_at11/113+718729..721497F-box domain containing protein, expressed
LOC_Os03g02230NANA3+722557..723153hypothetical protein
LOC_Os03g02240Os.39576.1.A1_s_at11/113+730369..734080expressed protein
LOC_Os03g02240OsAffx.24964.3.S1_x_at1/113+730369..734080expressed protein
LOC_Os03g02240OsAffx.2477.1.S1_x_at1/113+730369..734080expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0004497molecular_functionmonooxygenase activity
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
GO:0046424molecular_functionferulate 5-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16138.1.S1_s_at--200--9671Chr03:704707..704731 (25 bp)
TCACCTGCCCGATGTGACGCGCGTT
LOC_Os03g02180
Os.16138.1.S1_s_at--287--6271Chr03:704697..704721 (25 bp)
GATGTGACGCGCGTTCTCGATTTGG
LOC_Os03g02180
Os.16138.1.S1_s_at--369--8671Chr03:704695..704719 (25 bp)
TGTGACGCGCGTTCTCGATTTGGCG
LOC_Os03g02180
Os.16138.1.S1_s_at--753--4071Chr03:704670..704694 (25 bp)
CGAGAGATGCGCAACGCAGCTCGAA
LOC_Os03g02180
Os.16138.1.S1_s_at--531--611Chr03:704664..704688 (25 bp)
ATGCGCAACGCAGCTCGAAGTGTGA
LOC_Os03g02180
Os.16138.1.S1_s_at--643--4591Chr03:704662..704686 (25 bp)
GCGCAACGCAGCTCGAAGTGTGACT
LOC_Os03g02180
Os.16138.1.S1_s_at--251--1851Chr03:704657..704681 (25 bp)
ACGCAGCTCGAAGTGTGACTGTGAC
LOC_Os03g02180
Os.16138.1.S1_s_at--1155--4651Chr03:704625..704649 (25 bp)
GCGTGTAATCTGGTGTGGACATCGT
LOC_Os03g02180
Os.16138.1.S1_s_at--970--3051Chr03:704619..704643 (25 bp)
AATCTGGTGTGGACATCGTATGCAT
LOC_Os03g02180
Os.16138.1.S1_s_at--670--3891Chr03:704616..704640 (25 bp)
CTGGTGTGGACATCGTATGCATCAT
LOC_Os03g02180
Os.16138.1.S1_s_at--148--8531Chr03:704610..704634 (25 bp)
TGGACATCGTATGCATCATGTGTGC
LOC_Os03g02180
Target Sequence 
TCACCTGCCCGATGTGACGCGCGTTCTCGATTTGGCGCCGAGAGATGCGCAACGCAGCTCGAAGTGTGACTGTGACCGTG
TGAGCGTGTAATCTGGTGTGGACATCGTATGCATCATGTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16138.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis