Browse Element(s) Details


Os.16218.1.S1_at

Description gb:AK107056.1
DB_XREF= gi:32992265
TID=Os.16218.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16218 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-D08, full insert sequence.
FL= gb:AK107056.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3037011/11MOTHER of FT and TF1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30330OsAffx.18105.3.S1_at11/116+17518054..17518602immediate-early fungal elicitor protein CMPG1, putative
LOC_Os06g30340NANA6+17522117..17523148retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g30350Os.47130.4.A1_x_at1/116+17533154..17533486retrotransposon protein, putative, unclassified
LOC_Os06g30350Os.37083.2.S1_at1/116+17533154..17533486retrotransposon protein, putative, unclassified
LOC_Os06g30370Os.16218.1.S1_at11/116+17538926..17541483MOTHER of FT and TF1 protein, putative, expressed
LOC_Os06g30380Os.20068.1.S1_at11/116+17549122..17552472expressed protein
LOC_Os06g30390OsAffx.27881.1.S1_at10/116+17554779..17561527expressed protein
LOC_Os06g30390Os.7438.1.S1_at10/116+17554779..17561527expressed protein
LOC_Os06g30400NANA6+17564598..17565011hypothetical protein
LOC_Os06g30409Os.55753.1.S1_x_at1/116+17566345..17566931NA

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0009910biological_processnegative regulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0008429molecular_functionphosphatidylethanolamine binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16218.1.S1_at--728--1571Chr06:17541029..17541211 (25 bp)
AGCTCTTCGCTCTGGTCATGACTGA
LOC_Os06g30370
Os.16218.1.S1_at--250--7131Chr06:17541015..17541039 (25 bp)
GTCATGACTGATCCAGATGCTCCTA
LOC_Os06g30370
Os.16218.1.S1_at--761--9991Chr06:17540992..17541016 (25 bp)
TAGCCCCAGCGAGCCGACTATGAGA
LOC_Os06g30370
Os.16218.1.S1_at--389--4231Chr06:17540979..17541003 (25 bp)
CCGACTATGAGAGAGTGGCTTCACT
LOC_Os06g30370
Os.16218.1.S1_at--1133--8291Chr06:17540723..17540987 (25 bp)
GGCTTCACTGGCTGGTGGTTAACAT
LOC_Os06g30370
Os.16218.1.S1_at--30--6371Chr06:17539294..17539318 (25 bp)
GATCCACCGCTACGTGATGGTGCTG
LOC_Os06g30370
Os.16218.1.S1_at--912--4091Chr06:17539057..17539081 (25 bp)
CGACGGCGACCTAGCTAGCTAATAA
LOC_Os06g30370
Os.16218.1.S1_at--421--1571Chr06:17539041..17539065 (25 bp)
AGCTAATAAGCCATCGGTCGGCCAT
LOC_Os06g30370
Os.16218.1.S1_at--1086--4231Chr06:17539011..17539035 (25 bp)
CCGTCCAAACTATCATGCACCATAT
LOC_Os06g30370
Os.16218.1.S1_at--627--9031Chr06:17538996..17539020 (25 bp)
TGCACCATATCATGTCGTCGTTTAT
LOC_Os06g30370
Os.16218.1.S1_at--768--191Chr06:17538957..17538981 (25 bp)
ATTTCCGGCGTTTTATTACTGTGTG
LOC_Os06g30370
Target Sequence 
AGCTCTTCGCTCTGGTCATGACTGATCCAGATGCTCCTAGCCCCAGCGAGCCGACTATGAGAGAGTGGCTTCACTGGCTG
GTGGTTAACATACCAGGTGGAACANGATCCTTCTCAAGGGGATGTGGTGGTGCCGTACATGGGGCCACGGCCGCCGGTGG
GGATCCACCGCTACGTGATGGTGCTGTTCCAGCAGAAGGCGCGCGTGGCNGCGCCGCCGCCCGACGAGGACGCCGCGCGC
GCCAGGTTCAGCACGCGCGCCTTCGCCGACCGCCACGACCTCGGCCTCCCCGTCGCCGCCCTCTACTTCAACGCCCAGAA
GGAGCCCGCCANCCGCCGCCGCCGCTACTAGCCTCCCTCCCCTCGCTCGGCGTCGCCCATCCATCCATCCATGGACGGCG
ACGGCGACCTAGCTAGCTAATAAGCCATCGGTCGGCCATGCTCGCCGTCCAAACTATCATGCACCATATCATGTCGTCGT
TTATGTGGTTAATTAATTATTTCCGGCGTTTTATTACTGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis