Browse Element(s) Details


Os.16220.1.A1_at

Description gb:AK065212.1
DB_XREF= gi:32975230
TID=Os.16220.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16220 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002G02, full insert sequence.
FL= gb:AK065212.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0399011/11aminotransferase ACS12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03970Os.4294.1.S1_a_at11/116+1604743..1611389Leucine Rich Repeat family protein, expressed
LOC_Os06g03980Os.24969.1.A1_at11/116+1612665..1619184expressed protein
LOC_Os06g03980OsAffx.1574.1.S1_at1/116+1612665..1619184expressed protein
LOC_Os06g03980Os.50299.1.S1_at1/116+1612665..1619184expressed protein
LOC_Os06g03990Os.16220.1.A1_at11/116+1628796..1632617aminotransferase ACS12, putative, expressed
LOC_Os06g04000Os.4299.1.S1_at11/116+1634099..1635030Peptidyl-prolyl cis-trans isomerase-like 3, putative, expressed
LOC_Os06g04010Os.10575.1.S1_at11/116+1635529..1639861GAGA binding protein-like family protein, expressed
LOC_Os06g04020Os.12784.1.S1_at10/116+1641583..1642800linker histone H1 and H5 family protein, expressed
LOC_Os06g04020Os.49642.1.S1_x_at4/116+1641583..1642800linker histone H1 and H5 family protein, expressed
LOC_Os06g04030Os.47392.1.A1_x_at10/116+1644415..1645324Histone H3, putative, expressed
LOC_Os06g04040Os.27000.1.S1_s_at11/116+1647596..1653301Guanine nucleotide-binding protein beta subunit-like protein 1, putative, expressed
LOC_Os06g04040Os.27000.2.S1_x_at11/116+1647596..1653301Guanine nucleotide-binding protein beta subunit-like protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0006519biological_processamino acid and derivative metabolism
GO:0009693biological_processethylene biosynthesis
GO:0004069molecular_functionaspartate transaminase activity
GO:0008793molecular_functionaromatic-amino-acid transaminase activity
GO:0016847molecular_function1-aminocyclopropane-1-carboxylate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16220.1.A1_at--181--1011Chr06:1632052..1632076 (25 bp)
AGGATTATCCTCTCGAGCTTGTCAT
LOC_Os06g03990
Os.16220.1.A1_at--556--9731Chr06:1632145..1632169 (25 bp)
TAATCCTTCTTTACCATGGGAACTA
LOC_Os06g03990
Os.16220.1.A1_at--273--791Chr06:1632160..1632184 (25 bp)
ATGGGAACTACTCCTAACAACCAGT
LOC_Os06g03990
Os.16220.1.A1_at--524--4751Chr06:1632278..1632302 (25 bp)
GCTGAGTTGCTTTTATTGATCTGTA
LOC_Os06g03990
Os.16220.1.A1_at--364--10091Chr06:1632301..1632325 (25 bp)
TAGGTCTCAGCTGCTTCCATTGTAG
LOC_Os06g03990
Os.16220.1.A1_at--388--5511Chr06:1632338..1632362 (25 bp)
GAAAATTGCCCATCTGTTGATAGGT
LOC_Os06g03990
Os.16220.1.A1_at--8--3251Chr06:1632368..1632392 (25 bp)
CAAGCATAAGTTCATTCTCTCTGTA
LOC_Os06g03990
Os.16220.1.A1_at--659--3771Chr06:1632384..1632408 (25 bp)
CTCTCTGTAGGTCCATTGTGACATA
LOC_Os06g03990
Os.16220.1.A1_at--3--7051Chr06:1632440..1632464 (25 bp)
GTAAATCAGTTCCTGCTTGTGCCAG
LOC_Os06g03990
Os.16220.1.A1_at--549--7271Chr06:1632458..1632482 (25 bp)
GTGCCAGGGTTTTGGACGCGACTCA
LOC_Os06g03990
Os.16220.1.A1_at--718--5791Chr06:1632472..1632496 (25 bp)
GACGCGACTCATATGTTGTCATCAA
LOC_Os06g03990
Target Sequence 
AGGATTATCCTCTCGAGCTTGTCATGGAATGGAATAACTGCTTTGCCANGTACTCCACAGAGAATCCAGGGGGCATAGAG
GAAAAAGATGGTATAATCCTTCTTTACCATGGGAACTACTCCTAACAACCAGTAGGAGNAATCGTACGCCTTTGCTGGAA
CAAAGACAAATCAGGACCATGTTTGTATTGATCTGTTGAAGAACAACAGNTCTTTTGAAAGTTGTTGCTGAGTTGCTTTT
ATTGATCTGTAGGTCTCAGCTGCTTCCATTGTAGGGGTTTCAGATAGAAAATTGCCCATCTGTTGATAGGTTAAATCAAG
CATAAGTTCATTCTCTCTGTAGGTCCATTGTGACATAAGCTAGTGTTGGGTTTTTGTTTTGTGAGTTTGTAAATCAGTTC
CTGCTTGTGCCAGGGTTTTGGACGCGACTCATATGTTGTCATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16220.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis