Browse Element(s) Details


Os.16247.1.S1_s_at

Description gb:AK063082.1
DB_XREF= gi:32973100
TID=Os.16247.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.16247 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-A04, full insert sequence.
FL= gb:AK063082.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0215011/11Adaptin N terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02100Os.33311.1.S1_at5/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02100Os.9138.1.S1_at1/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02110Os.24954.1.A1_s_at11/113+653032..660226expressed protein
LOC_Os03g02110Os.50528.1.S1_at11/113+653032..660226expressed protein
LOC_Os03g02120NANA3+661125..665059transposon protein, putative, Mariner sub-class
LOC_Os03g02130Os.38395.3.S1_x_at8/113+666915..668224hypothetical protein
LOC_Os03g02130Os.38395.2.S1_x_at6/113+666915..668224hypothetical protein
LOC_Os03g02130Os.38395.1.S1_at6/113+666915..668224hypothetical protein
LOC_Os03g02140Os.38395.4.S1_x_at6/113+671415..675170transposon protein, putative, Mutator sub-class
LOC_Os03g02150Os.16247.1.S1_s_at11/113+676538..687033Adaptin N terminal region family protein, expressed
LOC_Os03g02160Os.9553.1.S1_at11/113+695792..699149Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os03g02170Os.53878.1.S1_at11/113+699458..703572expressed protein
LOC_Os03g02180Os.16138.1.S1_s_at11/113+704561..706349Cytochrome P450 84A1, putative, expressed
LOC_Os03g02180OsAffx.12708.1.S1_x_at11/113+704561..706349Cytochrome P450 84A1, putative, expressed
LOC_Os03g02190Os.50750.1.S1_at11/113+710833..712592Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
GO:0030121cellular_componentAP-1 adaptor complex
GO:0030276molecular_functionclathrin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16247.1.S1_s_at--699--2991Chr03:686488..686512 (25 bp)
AATGACCCTGGTGCAATGCTAGCTG
LOC_Os03g02150
Os.16247.1.S1_s_at--404--4971Chr03:686540..686564 (25 bp)
GCATCTTGGTGTACATGACAGTTGT
LOC_Os03g02150
Os.16247.1.S1_s_at--431--451Chr03:686576..686600 (25 bp)
ATCTAACATCACCACAAGCATCTTG
LOC_Os03g02150
Os.16247.1.S1_s_at--340--9651Chr03:686662..686686 (25 bp)
TCAGCTCAGATTCTTCTCCGGGAAA
LOC_Os03g02150
Os.16247.1.S1_s_at--631--5091Chr03:686687..686711 (25 bp)
GCACTAGATTTTTTGGGCCCTTGTA
LOC_Os03g02150
Os.16247.1.S1_s_at--306--4211Chr03:686715..686739 (25 bp)
CCCCTTCATCGCCATAGTGTGTAAG
LOC_Os03g02150
Os.16247.1.S1_s_at--797--8651Chr03:686732..686756 (25 bp)
TGTGTAAGGTTCGTTTTGCTCCGTC
LOC_Os03g02150
Os.16247.1.S1_s_at--408--10811Chr03:686777..686801 (25 bp)
TTGTATACCCGCGTTGCCCTAGGTG
LOC_Os03g02150
Os.16247.1.S1_s_at--394--10631Chr03:686790..686814 (25 bp)
TTGCCCTAGGTGTGGTGGTGAACAT
LOC_Os03g02150
Os.16247.1.S1_s_at--980--10171Chr03:686836..686860 (25 bp)
TATAAGTTGCTAGGTTTTTCCACCA
LOC_Os03g02150
Os.16247.1.S1_s_at--262--2831Chr03:686872..686896 (25 bp)
AAGTTGCCATGTATGCGCATTGCAT
LOC_Os03g02150
Target Sequence 
AATGACCCTGGTGCAATGCTAGCTGGGTTGCTATAAAAAGTTGAAACAAATAGCATCTTGGTGTACATGACAGTTGTTTA
ATGTGAGGATCTAACATCACCACAAGCATCTTGCTGCTGCCAAGACGACGTGTGGATGAAGGTCAATGNAGAGAGGGCTG
GCGGAGTAGTCCCCTCAGCTCAGATTCTTCTCCGGGAAAGCACTAGATTTTTTGGGCCCTTGTAAGGCCCCTTCATCGCC
ATAGTGTGTAAGGTTCGTTTTGCTCCGTCATTTCCACCACCCTGCCATCTTGTATACCCGCGTTGCCCTAGGTGTGGTGG
TGAACATTGAGTAGTTTTTGTGTGTTTATATAAGTTGCTAGGTTTTTCCACCAAACCGATTGTAAAGTTGCCATGTATGC
GCATTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16247.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis