Browse Element(s) Details


Os.16309.1.S1_at

Description gb:AK099808.1
DB_XREF= gi:32985017
TID=Os.16309.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16309 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098J22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098J22, full insert sequence.
FL= gb:AK099808.1 gb:AK066315.1 gb:AK072601.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2555011/11puative protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25520OsAffx.29755.1.S1_s_at11/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.3.S1_x_at10/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.3.S1_at8/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.4.S1_x_at5/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.5.S1_x_at4/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.2.S1_x_at4/119+15303466..15310899hypothetical protein
LOC_Os09g25530OsAffx.17891.1.S1_at11/119+15314583..15314906hypothetical protein
LOC_Os09g25540OsAffx.17892.1.S1_at11/119+15319528..15322850Leucine Rich Repeat family protein
LOC_Os09g25550Os.16309.1.S1_at11/119+15327753..15331300puative protein, putative, expressed
LOC_Os09g25550Os.23249.1.A1_at1/119+15327753..15331300puative protein, putative, expressed
LOC_Os09g25560Os.53342.1.S1_at11/119+15331959..15337794integral membrane transporter family protein, putative, expressed
LOC_Os09g25570Os.47386.1.S1_at10/119+15343636..15346098Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g25580Os.11912.1.S1_at11/119+15348087..15354532MGDG synthase type A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16309.1.S1_at--963--8031Chr09:15330717..15330741 (25 bp)
GGAGTTGCAAACGTTCTTGCGGAGC
LOC_Os09g25550
Os.16309.1.S1_at--331--8631Chr09:15330752..15330776 (25 bp)
TGGTGGCGAGCCAGATCTGTACAGT
LOC_Os09g25550
Os.16309.1.S1_at--1006--2911Chr09:15330856..15330880 (25 bp)
AAGGCATTGCCGCTGACCGAGTAAC
LOC_Os09g25550
Os.16309.1.S1_at--104--9811Chr09:15330887..15330911 (25 bp)
TAACCTTATAGCTGCTCTACAGAGG
LOC_Os09g25550
Os.16309.1.S1_at--749--9771Chr09:15330935..15330959 (25 bp)
TAAGTGGTCTCTCTGGATGAAGCAA
LOC_Os09g25550
Os.16309.1.S1_at--964--1231Chr09:15330965..15330989 (25 bp)
AGTTGCTGCAACTCGAACATGATGT
LOC_Os09g25550
Os.16309.1.S1_at--704--5211Chr09:15330996..15331020 (25 bp)
GAATTCAGAGTTTTGGTTGCATGCA
LOC_Os09g25550
Os.16309.1.S1_at--547--6671Chr09:15331011..15331035 (25 bp)
GTTGCATGCAAATTCTGGCATCCGC
LOC_Os09g25550
Os.16309.1.S1_at--642--8271Chr09:15331027..15331051 (25 bp)
GGCATCCGCACACGTTTATATTTCA
LOC_Os09g25550
Os.16309.1.S1_at--615--6731Chr09:15331112..15331136 (25 bp)
GTTCTACACATCCTATGGGTACCGG
LOC_Os09g25550
Os.16309.1.S1_at--1024--3711Chr09:15331154..15331178 (25 bp)
CTACCTTTCCATTCTCTTACAAGAT
LOC_Os09g25550
Target Sequence 
GGAGTTGCAAACGTTCTTGCGGAGCTAAAGAGCCGTGGTGGCGAGCCAGATCTGTACAGTTACAACACCTTGATAAAAGC
ATACGGGATAGCAGGAATGCCTGAAGATGCTGTTAAACTGATGCAGGAGATGAGGATTAAAGGCATTGCCGCTGACCGAG
TAACCTATACTAACCTTATAGCTGCTCTACAGAGGAATGAGAATTTCCTGGAAGCAGTTAAGTGGTCTCTCTGGATGAAG
CAAACTGGAGTTGCTGCAACTCGAACATGATGTGCCTAAGAATTCAGAGTTTTGGTTGCATGCAAATTCTGGCATCCGCA
CACGTTTATATTTCATCTTTCAGTAGAGTACATACATACATGTGAGTGACATTGTACAGAGAACTATTTCTGATTGTTCT
ACACATCCTATGGGTACCGGAGATTCAGAAAAACCTCCTACCTTTCCATTCTCTTACAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16309.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis