Browse Element(s) Details


Os.16325.1.S1_at

Description gb:AK068853.1
DB_XREF= gi:32978878
TID=Os.16325.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16325 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013169G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169G11, full insert sequence.
FL= gb:AK068853.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3783011/11potassium uptake protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37790OsAffx.29075.1.S1_at7/113+20908616..20912425hAT dimerisation domain-containing protein, putative
LOC_Os03g37790OsAffx.9043.1.S1_at1/113+20908616..20912425hAT dimerisation domain-containing protein, putative
LOC_Os03g37790OsAffx.28537.1.S1_x_at1/113+20908616..20912425hAT dimerisation domain-containing protein, putative
LOC_Os03g37800OsAffx.13221.1.S1_at11/113+20914880..20915379hypothetical protein
LOC_Os03g37810Os.8326.1.S1_at10/113+20915957..20916761expressed protein
LOC_Os03g37820NANA3+20919087..20919371hypothetical protein
LOC_Os03g37830Os.16325.1.S1_at11/113+20933250..20940389potassium uptake protein, expressed
LOC_Os03g37840Os.20541.1.S1_at11/113+20957422..20962259Potassium transporter 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0016020cellular_componentmembrane
GO:0009674molecular_functionpotassium:sodium symporter activity
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16325.1.S1_at--733--4511Chr03:20934003..20934027 (25 bp)
GCCGAATCCTTCTCTGAGCATACAA
LOC_Os03g37830
Os.16325.1.S1_at--1028--5911Chr03:20933988..20934012 (25 bp)
GAGCATACAAAGCAACTTAGTGGCA
LOC_Os03g37830
Os.16325.1.S1_at--1149--5931Chr03:20933713..20933737 (25 bp)
GAGCAGCAGGCTATCCTCAGAGAGA
LOC_Os03g37830
Os.16325.1.S1_at--509--1331Chr03:20933658..20933682 (25 bp)
AGAGTGACATAGTGGCAAGCCCTCA
LOC_Os03g37830
Os.16325.1.S1_at--714--9671Chr03:20933636..20933660 (25 bp)
TCACTCCTCGCTTCTTAACAAGATC
LOC_Os03g37830
Os.16325.1.S1_at--1092--10451Chr03:20933603..20933627 (25 bp)
TTACATCTATTCTTTCCTTAGAAAA
LOC_Os03g37830
Os.16325.1.S1_at--495--6291Chr03:20933558..20933582 (25 bp)
GATGTTGTCTATTCCTCGCAGCCAA
LOC_Os03g37830
Os.16325.1.S1_at--267--9271Chr03:20933546..20933570 (25 bp)
TCCTCGCAGCCAAGTACTAAAGGTT
LOC_Os03g37830
Os.16325.1.S1_at--282--10451Chr03:20933435..20933459 (25 bp)
TTAGTACTCCAGGTACTAGGTACCT
LOC_Os03g37830
Os.16325.1.S1_at--156--9971Chr03:20933382..20933406 (25 bp)
TACCTCTAGGTACTTTCTGGAGAAC
LOC_Os03g37830
Os.16325.1.S1_at--867--7851Chr03:20933320..20933344 (25 bp)
GGTAGTTGATATTTCTCACATAATA
LOC_Os03g37830
Target Sequence 
GCCGAATCCTTCTCTGAGCATACAAAGCAACTTAGTGGCAGAAGCAAGCATTTTAAACAATTTCAGGTAGAGAATATGAA
CATGCAAAAGATGGAGAAGGTACANCAGGAGCAGCAGGCTATCCTCAGAGAGATGGAGAATGGTGTTGTGTACATACTTG
GAGAGAGTGACATAGTGGCAAGCCCTCACTCCTCGCTTCTTAACAAGATCATTGTCAATTACATCTATTCTTTCCTTAGA
AAAAACTGTAGAAATGGCGAGAAGATGTTGTCTATTCCTCGCAGCCAAGTACTAAAGGTTGGAATCGCATATGAGATATA
AGCATATGGGTAATTTTATCATTCTTGNGAAAGTATTTAGAGTTACCATATTTTTNAGTGTAAAATTTAGTACTCCAGGT
ACTAGGTACCTCGAGGTACCAATTTTAATGTAAATTTGGTACCTCTAGGTACTTTCTGGAGAACTGTAAAATTTCTGTAA
GCACATGTATAAGACACAGATGGTAGTTGATATTTCTCACATAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16325.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis