Browse Element(s) Details


OsAffx.13221.1.S1_at

Description tigr:9631.m03625
TID=OsAffx.13221.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3780011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37760NANA3+20891752..20892197hypothetical protein
LOC_Os03g37770OsAffx.25404.1.S1_at11/113+20894511..20895086hypothetical protein
LOC_Os03g37780Os.53421.1.S1_at9/113+20899777..20903259hypothetical protein
LOC_Os03g37790OsAffx.29075.1.S1_at7/113+20908616..20912425hAT dimerisation domain-containing protein, putative
LOC_Os03g37790OsAffx.9043.1.S1_at1/113+20908616..20912425hAT dimerisation domain-containing protein, putative
LOC_Os03g37790OsAffx.28537.1.S1_x_at1/113+20908616..20912425hAT dimerisation domain-containing protein, putative
LOC_Os03g37800OsAffx.13221.1.S1_at11/113+20914880..20915379hypothetical protein
LOC_Os03g37810Os.8326.1.S1_at10/113+20915957..20916761expressed protein
LOC_Os03g37820NANA3+20919087..20919371hypothetical protein
LOC_Os03g37830Os.16325.1.S1_at11/113+20933250..20940389potassium uptake protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13221.1.S1_at--397--8531Chr03:20915288..20915312 (25 bp)
TGGAGCTGCCGTTGCTGACTAGGAC
LOC_Os03g37800
OsAffx.13221.1.S1_at--329--10711Chr03:20915277..20915301 (25 bp)
TTGCTGACTAGGACCAACTACCATG
LOC_Os03g37800
OsAffx.13221.1.S1_at--1074--2511Chr03:20915262..20915286 (25 bp)
AACTACCATGAGTGGTCCTTGGTCA
LOC_Os03g37800
OsAffx.13221.1.S1_at--738--5611Chr03:20915195..20915214 (20 bp)
GACAAGCTCGAGCATCGTGAAGGTC
LOC_Os03g37800
OsAffx.13221.1.S1_at--672--6291Chr03:20915053..20915077 (25 bp)
GATGATCGCGCGAAGTCCGCCAGCA
LOC_Os03g37800
OsAffx.13221.1.S1_at--124--9311Chr03:20915038..20915062 (25 bp)
TCCGCCAGCATGCAACGTCTCTTGA
LOC_Os03g37800
OsAffx.13221.1.S1_at--919--6751Chr03:20915009..20915033 (25 bp)
GTTCAAGAACGTCGCGTTCCATGAT
LOC_Os03g37800
OsAffx.13221.1.S1_at--1057--7631Chr03:20914983..20915007 (25 bp)
GGGAGTCCGTTGACGACTTCGCGAT
LOC_Os03g37800
OsAffx.13221.1.S1_at--562--8391Chr03:20914973..20914997 (25 bp)
TGACGACTTCGCGATGCACATCAAT
LOC_Os03g37800
OsAffx.13221.1.S1_at--937--651Chr03:20914960..20914984 (25 bp)
ATGCACATCAATGGGCTTGTCGCTA
LOC_Os03g37800
OsAffx.13221.1.S1_at--566--10811Chr03:20914944..20914968 (25 bp)
TTGTCGCTAGCCTGGCGCAAGCATG
LOC_Os03g37800
Target Sequence 
TGGAGCTGCCGTTGCTGACTAGGACCAACTACCATGAGTGGTCCTTGGTCATGCGGGTGAGCTTGGAGGCGCTGGGGCTG
TGGGACACGGTGGAGAAGGACAAGCTCGAGCATCGTGAAGGTCGGGCTCGCTGTGAAGAAGTCGCGAAAGAGGCGCGGGC
TGCAGTGGAGAAGATGAGGGTCGGCGATGATCGCGCGAAGTCCGCCAGCATGCAACGTCTCTTGAAAGAGTTCAAGAACG
TCGCGTTCCATGATGGGGAGTCCGTTGACGACTTCGCGATGCACATCAATGGGCTTGTCGCTAGCCTGGCGCAAGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13221.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis