Browse Element(s) Details


OsAffx.25404.1.S1_at

Description tigr:9631.m03622
TID=OsAffx.25404.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3777011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37720NANA3+20868240..20872040NB-ARC domain containing protein
LOC_Os03g37730NANA3+20878574..20879040hypothetical protein
LOC_Os03g37736Os.26886.2.S1_s_at6/113+20880757..20881960hypothetical protein
LOC_Os03g37736OsAffx.16467.1.S1_at6/113+20880757..20881960hypothetical protein
LOC_Os03g37736Os.26886.6.S1_s_at4/113+20880757..20881960hypothetical protein
LOC_Os03g37742NANA3+20882156..20883334transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37750Os.26886.3.S1_x_at7/113+20886316..20889667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37750Os.26886.1.S1_x_at6/113+20886316..20889667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37760NANA3+20891752..20892197hypothetical protein
LOC_Os03g37770OsAffx.25404.1.S1_at11/113+20894511..20895086hypothetical protein
LOC_Os03g37780Os.53421.1.S1_at9/113+20899777..20903259hypothetical protein
LOC_Os03g37790OsAffx.29075.1.S1_at7/113+20908616..20912425hAT dimerisation domain-containing protein, putative
LOC_Os03g37790OsAffx.9043.1.S1_at1/113+20908616..20912425hAT dimerisation domain-containing protein, putative
LOC_Os03g37790OsAffx.28537.1.S1_x_at1/113+20908616..20912425hAT dimerisation domain-containing protein, putative
LOC_Os03g37800OsAffx.13221.1.S1_at11/113+20914880..20915379hypothetical protein
LOC_Os03g37810Os.8326.1.S1_at10/113+20915957..20916761expressed protein
LOC_Os03g37820NANA3+20919087..20919371hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25404.1.S1_at--782--1811Chr03:20894554..20894578 (25 bp)
ACGCCGGCCTTGTCGCCGTAGACGA
LOC_Os03g37770
OsAffx.25404.1.S1_at--367--3391Chr03:20894585..20894609 (25 bp)
CAGCGCCAGGATTGCCGGCCACAGA
LOC_Os03g37770
OsAffx.25404.1.S1_at--443--1931Chr03:20894664..20894688 (25 bp)
ACGGACGACGCGATGAGCTTCGAGT
LOC_Os03g37770
OsAffx.25404.1.S1_at--563--1831Chr03:20894671..20894695 (25 bp)
ACGCGATGAGCTTCGAGTTCAGCGC
LOC_Os03g37770
OsAffx.25404.1.S1_at--632--1551Chr03:20894679..20894703 (25 bp)
AGCTTCGAGTTCAGCGCGGCGGTCA
LOC_Os03g37770
OsAffx.25404.1.S1_at--137--10531Chr03:20894688..20894712 (25 bp)
TTCAGCGCGGCGGTCAGCTACAGCT
LOC_Os03g37770
OsAffx.25404.1.S1_at--12--2691Chr03:20894892..20894916 (25 bp)
AAGCGTGTCAGCTTCAACGACGGTG
LOC_Os03g37770
OsAffx.25404.1.S1_at--18--7451Chr03:20894896..20894920 (25 bp)
GTGTCAGCTTCAACGACGGTGGCGC
LOC_Os03g37770
OsAffx.25404.1.S1_at--523--7331Chr03:20894993..20895017 (25 bp)
GTGCATGGGATCAACGTGTACGTGC
LOC_Os03g37770
OsAffx.25404.1.S1_at--1002--371Chr03:20895002..20895026 (25 bp)
ATCAACGTGTACGTGCGGGTCGTCA
LOC_Os03g37770
OsAffx.25404.1.S1_at--1094--4651Chr03:20895016..20895040 (25 bp)
GCGGGTCGTCACGTAACGAGGTGGT
LOC_Os03g37770
Target Sequence 
ACGCCGGCCTTGTCGCCGTAGACGACGACGGCAGCGCCAGGATTGCCGGCCACAGACGGCAGAGCGCGCCGGTGGTGGCG
GTGGCGGTGGAGACACCGCCGACGTCCTCGACGGACGACGCGATGAGCTTCGAGTTCAGCGCGGCGGTCAGCTACAGCTC
CGCGTCGCCGGCCAGCATGGTGTTCTCCGACGGCCAGCTCCGGGCGCACCAGTTCCCGGCCGTGCGGTCGTCGTCGGCGG
CGAGCAGCCATGTGGCGTCGCCGGTTCGGAGCTGGAGCTCCTCCATGGGCGGCAGTGGCGGCGCCAAGGGTGGGTCGTCA
GGCGGCGGGAGCAAGAAGAAGCGTGTCAGCTTCAACGACGGTGGCGCGGGGCGGGCGGCAGCGGCGACGGCGGCCAACGC
CGGCGACCAGCAGAGGACGAGAGGCGGCGGCTTGCTGGGGTGCATGGGATCAACGTGTACGTGCGGGTCGTCACGTAACG
AGGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis