Browse Element(s) Details


Os.8326.1.S1_at

Description gb:AK063006.1
DB_XREF= gi:32973024
TID=Os.8326.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8326 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-H11, full insert sequence.
FL= gb:AK063006.1 gb:AK104941.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3781010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37760NANA3+20891752..20892197hypothetical protein
LOC_Os03g37770OsAffx.25404.1.S1_at11/113+20894511..20895086hypothetical protein
LOC_Os03g37780Os.53421.1.S1_at9/113+20899777..20903259hypothetical protein
LOC_Os03g37790OsAffx.29075.1.S1_at7/113+20908616..20912425hAT dimerisation domain-containing protein, putative
LOC_Os03g37790OsAffx.9043.1.S1_at1/113+20908616..20912425hAT dimerisation domain-containing protein, putative
LOC_Os03g37790OsAffx.28537.1.S1_x_at1/113+20908616..20912425hAT dimerisation domain-containing protein, putative
LOC_Os03g37800OsAffx.13221.1.S1_at11/113+20914880..20915379hypothetical protein
LOC_Os03g37810Os.8326.1.S1_at10/113+20915957..20916761expressed protein
LOC_Os03g37820NANA3+20919087..20919371hypothetical protein
LOC_Os03g37830Os.16325.1.S1_at11/113+20933250..20940389potassium uptake protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8326.1.S1_at--1054--2331Chr03:20916719..20916743 (25 bp)
AAAGAAGCCTTGAAGGTCACAGCCC
LOC_Os03g37810
Os.8326.1.S1_at--427--7611Chr03:20916684..20916708 (25 bp)
GGGAAGAAACATATCGTCATCAGAT
LOC_Os03g37810
Os.8326.1.S1_at--650--131NONE
ATTAATCTCAATCTCCAGCTAGCGT
NONE
Os.8326.1.S1_at--468--6311Chr03:20916378..20916402 (25 bp)
GATGCCCAAACCTGGGCAGACCAGT
LOC_Os03g37810
Os.8326.1.S1_at--879--2831Chr03:20916192..20916216 (25 bp)
AAGTCCGGGACGAGCAGTGGCATCA
LOC_Os03g37810
Os.8326.1.S1_at--130--6611Chr03:20916128..20916152 (25 bp)
GATTGGATTTCTGATGCGTTTGCCT
LOC_Os03g37810
Os.8326.1.S1_at--552--611Chr03:20916115..20916139 (25 bp)
ATGCGTTTGCCTGGTTGCTATGCCA
LOC_Os03g37810
Os.8326.1.S1_at--114--10151Chr03:20916097..20916121 (25 bp)
TATGCCATCGTCTCACTAGCTGTTG
LOC_Os03g37810
Os.8326.1.S1_at--766--1611Chr03:20916080..20916104 (25 bp)
AGCTGTTGCTCCTTTAGCTTGAAGC
LOC_Os03g37810
Os.8326.1.S1_at--759--1811Chr03:20916032..20916056 (25 bp)
ACGGGAGGTTATGTCTTTGGCGCTA
LOC_Os03g37810
Os.8326.1.S1_at--741--7151Chr03:20916020..20916044 (25 bp)
GTCTTTGGCGCTATTCATTTGGATG
LOC_Os03g37810
Target Sequence 
AAAGAAGCCTTGAAGGTCACAGCCCAAAGGAAGAAGGGAAGAAACATATCGTCATCAGATTAATCTCAATCTCCAGCTAG
CGTCTCCATGGGTTCCAAGAAGGATGCCCAAACCTGGGCAGACCAGTGGGGCTCATCTGGTGGCGACGGAAGCTTCAAGA
AAGGAGGAGGAGGAGGAGGCAGCAGCGGGAACAGCGAGAAGAAGACGGTGGCCGGCAACGTGAAGGCCGCGGCGTCGGAG
GGCCTCGTGAAGGCGAAGGCGGCGGCGCTGGTCGGAGCGCACAAGGTGAAGTCCGGGACGAGCAGTGGCATCAAGTGGGT
CAAGGGCCAGTACCAGAAGAGGGCTGGAAAGTGATTGGATTTCTGATGCGTTTGCCTGGTTGCTATGCCATCGTCTCACT
AGCTGTTGCTCCTTTAGCTTGAAGCATTGAAGAAAGTATCGACCAGAGACGGGAGGTTATGTCTTTGGCGCTATTCATTT
GGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis