Browse Element(s) Details


Os.53421.1.S1_at

Description gb:AK072541.1
DB_XREF= gi:32982564
TID=Os.53421.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53421 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023134M10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023134M10, full insert sequence.
FL= gb:AK072541.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g377809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37730NANA3+20878574..20879040hypothetical protein
LOC_Os03g37736Os.26886.2.S1_s_at6/113+20880757..20881960hypothetical protein
LOC_Os03g37736OsAffx.16467.1.S1_at6/113+20880757..20881960hypothetical protein
LOC_Os03g37736Os.26886.6.S1_s_at4/113+20880757..20881960hypothetical protein
LOC_Os03g37742NANA3+20882156..20883334transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37750Os.26886.3.S1_x_at7/113+20886316..20889667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37750Os.26886.1.S1_x_at6/113+20886316..20889667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37760NANA3+20891752..20892197hypothetical protein
LOC_Os03g37770OsAffx.25404.1.S1_at11/113+20894511..20895086hypothetical protein
LOC_Os03g37780Os.53421.1.S1_at9/113+20899777..20903259hypothetical protein
LOC_Os03g37790OsAffx.29075.1.S1_at7/113+20908616..20912425hAT dimerisation domain-containing protein, putative
LOC_Os03g37790OsAffx.9043.1.S1_at1/113+20908616..20912425hAT dimerisation domain-containing protein, putative
LOC_Os03g37790OsAffx.28537.1.S1_x_at1/113+20908616..20912425hAT dimerisation domain-containing protein, putative
LOC_Os03g37800OsAffx.13221.1.S1_at11/113+20914880..20915379hypothetical protein
LOC_Os03g37810Os.8326.1.S1_at10/113+20915957..20916761expressed protein
LOC_Os03g37820NANA3+20919087..20919371hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53421.1.S1_at--852--1111Chr03:20900178..20900202 (25 bp)
AGTGCAAACCGCAGATCATGTCCCT
LOC_Os03g37780
Os.53421.1.S1_at--979--751Chr03:20900161..20900185 (25 bp)
ATGTCCCTGGCGCAAGCAGTGAATG
LOC_Os03g37780
Os.53421.1.S1_at--116--6591Chr03:20900135..20900159 (25 bp)
GATTGCCCGGGAGAGTTTGATGTTA
LOC_Os03g37780
Os.53421.1.S1_at--241--7691Chr03:20900105..20900129 (25 bp)
GGGTTTCATGTCTGTATGCGCGCGT
LOC_Os03g37780
Os.53421.1.S1_at--452--611Chr03:20900090..20900114 (25 bp)
ATGCGCGCGTTTGTGTGGAGATCTA
LOC_Os03g37780
Os.53421.1.S1_at--367--2531Chr03:20900066..20900090 (25 bp)
AACTTTCTGGTGTTTTGCAGACCTA
LOC_Os03g37780
Os.53421.1.S1_at--496--5831Chr03:20900047..20900071 (25 bp)
GACCTAAGTAGTTTGGATCTGCCTG
LOC_Os03g37780
Os.53421.1.S1_at--847--2391Chr03:20899983..20900007 (25 bp)
AAACTACGGCTTTGGTGCTGTTCTA
LOC_Os03g37780
Os.53421.1.S1_at--805--811Chr03:20899868..20899892 (25 bp)
ATGGTGTTATGGTCGCATCATCTAC
LOC_Os03g37780
Os.53421.1.S1_at--569--2131Chr03:20899759..20899783 (25 bp)
ACAGTGATCGCGCTTGCATGGATAG
NONE
Os.53421.1.S1_at--1061--10851Chr03:20899723..20899747 (25 bp)
TTGGTTGTTTCCGTCTCATTAGCAA
NONE
Target Sequence 
AGTGCAAACCGCAGATCATGTCCCTGGCGCAAGCAGTGAATGAGATTGCCCGGGAGAGTTTGATGTTACATTGGGGTTTC
ATGTCTGTATGCGCGCGTTTGTGTGGAGATCTAACTTTCTGGTGTTTTGCAGACCTAAGTAGTTTGGATCTGCCTGTGAT
GGAAGGTCTTGACAAATTACTTCTTGTAAGTTTACAAACTACGGCTTTGGTGCTGTTCTAATGGATTTCAACATCTTAAT
GTGATGTTGCAACGGATGCTTCATTTTCAAATATCAAAGGCCATGGCAAAGGGAGTAAACCCAGAAGAAAATGGTGTTAT
GGTCGCATCATCTACGAATGGAGGAATCGCGAGCCAGCGGCAGCCCATAGCGCTCAGAACGCCGGCTCCTGAACTACCGT
TGCAACTGCCGGACGAGCAACAGTGATCGCGCTTGCATGGATAGGATTAAGTTAGTTGGTTGTTTCCGTCTCATTAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis