Browse Element(s) Details


Os.16349.1.S1_at

Description gb:AK108667.1
DB_XREF= gi:32993876
TID=Os.16349.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16349 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-G06, full insert sequence.
FL= gb:AK108667.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1403410/11expressed protein
LOC_Os04g216402/11hypothetical protein
LOC_Os06g436701/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14030NANA5+7816536..7816910hypothetical protein
LOC_Os05g14034Os.16349.1.S1_at10/115+7824648..7825593expressed protein
LOC_Os05g14040OsAffx.26875.1.S1_at7/115+7829161..7829576D111/G-patch domain-containing protein, putative
LOC_Os05g14050NANA5+7832249..7834826hypothetical protein
LOC_Os05g14060OsAffx.11259.1.S1_at3/115+7835297..7838058retrotransposon protein, putative, unclassified
LOC_Os05g14060OsAffx.1585.1.S1_at2/115+7835297..7838058retrotransposon protein, putative, unclassified
LOC_Os05g14060OsAffx.22850.1.S1_x_at1/115+7835297..7838058retrotransposon protein, putative, unclassified
LOC_Os05g14060OsAffx.17107.1.S1_at1/115+7835297..7838058retrotransposon protein, putative, unclassified
LOC_Os05g14070OsAffx.14680.1.S1_at11/115+7842128..7843086hypothetical protein
LOC_Os05g14080OsAffx.14681.1.S1_at11/115+7843586..7845054hypothetical protein
LOC_Os05g14090OsAffx.13127.1.S1_at1/115+7847517..7852292retrotransposon protein, putative, unclassified
LOC_Os05g14090OsAffx.13127.1.S1_x_at1/115+7847517..7852292retrotransposon protein, putative, unclassified
LOC_Os05g14090OsAffx.22699.1.S1_x_at1/115+7847517..7852292retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16349.1.S1_at--1112--10591Chr05:7825206..7825230 (25 bp)
TTCGGGACAATCTCATCCGCGAAAA
LOC_Os05g14034
Os.16349.1.S1_at--377--8151Chr05:7825202..7825226 (25 bp)
GGACAATCTCATCCGCGAAAATCTA
LOC_Os05g14034
Os.16349.1.S1_at--975--5511Chr05:7825186..7825210 (25 bp)
GAAAATCTAGCGGACGGCGCCATCC
LOC_Os05g14034
Os.16349.1.S1_at--51--4194Chr06:26285277..26285302 (25 bp)
GCGCGGTAACCCTCTGGCTACCTTT
LOC_Os06g43670
Os.16349.1.S1_at--668--3231Chr05:7825039..7825063 (25 bp)
CAAGCAATAGTGAGGGCGAGCCGAC
LOC_Os05g14034
Os.16349.1.S1_at--787--1631Chr05:7825008..7825032 (25 bp)
AGCGTGCGAGCATGGGCGAGCCGAC
LOC_Os05g14034
Os.16349.1.S1_at--1082--4051Chr05:7824971..7824995 (25 bp)
CGAGCAAGGGCGAGACCAAGCTAGT
LOC_Os05g14034
Os.16349.1.S1_at--145--3711NONE
CTAGTGGCAGGGAGCACGCGAGCAC
NONE
Os.16349.1.S1_at--746--6834Chr05:13009534..13009558 (25 bp)
GTTTCAGATCTGTACATGTTCTTTC
NONE
Os.16349.1.S1_at--210--6414Chr05:13009540..13009564 (25 bp)
GATCTGTACATGTTCTTTCAGTAGA
NONE
Os.16349.1.S1_at--987--7314Chr06:3255273..3255297 (25 bp)
GTGCTTGAGCATGATATGGCAACAT
NONE
Target Sequence 
TTCGGGACAATCTCATCCGCGAAAATCTAGCGGACGGCGCCATCCCACTTCGCACGCGCGCGGTAACCCTCTGGCTACCT
TTTTTTTTTTCACCGCACCCCTTTCCTTTCTCCTTCGCTCACCGGCGGCGGGAGCACGCGAGCAAGGCAAGCCAGCAGCG
GGAGGGCGCAAGCAATAGTGAGGGCGAGCCGACGACGGGAGCGTGCGAGCATGGGCGAGCCGACGACGTGAGGGCGCGAG
CAAGGGCGAGACCAAGCTAGTGGCAGGGAGCACGCGAGCACGCGAGCANGGNNNNNCNNNNGNNNGGAGCACGCGNGCAG
GGGTGAGCCNGCGGCGGCCACGGCGGTGTCCAACCAGCCTCNATCCGCCNTCGGCCTCCAANGTCAGCAGCANGCGNGAT
NTTCCTTCTCCAATCCTCCNAGAATCCCNACGACANCATTGGATGGGGATTTNGTTTCAGATCTGTACATGTTCTTTCAG
TAGANATTTTTTTNTATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTGTGNTGAGATGATTAATTAGTGCTT
GAGCATGATATGGCAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis