Browse Element(s) Details


OsAffx.17107.1.S1_at

Description tigr:9636.m02191
TID=OsAffx.17107.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2252010/11hypothetical protein
LOC_Os05g140601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g22450NANA8+13409161..13409688retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22460NANA8+13411825..13412529NA
LOC_Os08g22480OsAffx.18275.2.S1_x_at1/118+13415277..13419739retrotransposon protein, putative, unclassified
LOC_Os08g22480OsAffx.18275.1.S1_x_at1/118+13415277..13419739retrotransposon protein, putative, unclassified
LOC_Os08g22480OsAffx.18275.2.S1_at1/118+13415277..13419739retrotransposon protein, putative, unclassified
LOC_Os08g22480OsAffx.13786.1.S1_x_at1/118+13415277..13419739retrotransposon protein, putative, unclassified
LOC_Os08g22500NANA8+13422844..13425225retrotransposon protein, putative, unclassified
LOC_Os08g22510NANA8+13426097..13428875hypothetical protein
LOC_Os08g22520OsAffx.17107.1.S1_at10/118+13433384..13435629hypothetical protein
LOC_Os08g22520OsAffx.10528.1.S1_x_at1/118+13433384..13435629hypothetical protein
LOC_Os08g22540OsAffx.29073.1.S1_x_at8/118+13439132..13443609retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22550Os.40360.1.S1_x_at1/118+13447044..13448471hypothetical protein
LOC_Os08g22560NANA8+13449468..13450637hypothetical protein
LOC_Os08g22570OsAffx.1651.1.S1_at1/118+13454335..13456114retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22570OsAffx.1651.1.S1_x_at1/118+13454335..13456114retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22590NANA8+13459116..13461222retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17107.1.S1_at--982--10111Chr08:13434966..13434990 (25 bp)
TATGATCCCGGTCACCATAGACAAG
LOC_Os08g22520
OsAffx.17107.1.S1_at--843--10412Chr08:13434991..13435015 (25 bp)
TTATCACCGGAGCATAAGCTGGAGC
LOC_Os08g22520
OsAffx.17107.1.S1_at--951--2611Chr08:13435068..13435092 (25 bp)
AACCCGCCAGGGAATGGTCATTCAG
LOC_Os08g22520
OsAffx.17107.1.S1_at--623--7911Chr08:13435110..13435134 (25 bp)
GGTTGCTGCCGATGAATCTGGAACA
LOC_Os08g22520
OsAffx.17107.1.S1_at--396--4711Chr08:13435246..13435270 (25 bp)
GCTGAGGGCCAACAAGAGTCTCCGA
LOC_Os08g22520
OsAffx.17107.1.S1_at--851--6091Chr08:13435261..13435285 (25 bp)
GAGTCTCCGAGGTGCAATAATTTCC
LOC_Os08g22520
OsAffx.17107.1.S1_at--379--3051NONE
AATCGACTATGCGTCAGTGGTTGAT
NONE
OsAffx.17107.1.S1_at--881--7111Chr08:13435432..13435456 (25 bp)
GTCTTTCCACCGTACAGGAACTTGA
LOC_Os08g22520
OsAffx.17107.1.S1_at--823--6751Chr08:13435495..13435519 (25 bp)
GTTCAGCCAACGACAGCAGTTTCAA
LOC_Os08g22520
OsAffx.17107.1.S1_at--1151--1731Chr08:13435536..13435560 (25 bp)
ACCTTCGTCGGCACAGAGGCATATG
LOC_Os08g22520
OsAffx.17107.1.S1_at--801--4951Chr08:13435554..13435578 (25 bp)
GCATATGGTTAATCCTCGTGTCCAG
LOC_Os08g22520
Target Sequence 
TATGATCCCGGTCACCATAGACAAGTTATCACCGGAGCATAAGCTGGAGCTTGAACAAATAATGAAAAGCGCTCAGGAGC
AATTCATGAATTCATTCAAGGAAACCCGCCAGGGAATGGTCATTCAGAAATACAAGCTAAAGGTGGTTGCTGCCGATGAA
TCTGGAACAAACTCATCTCAAGACGGCAGAACCAAGGGAGCTAAAGGTGGTGCAAATGGTTCAGGTGACAAAGGTTTAGA
GCCCAGGGATGGTGAGGTTGAGGATATTGGTGAAGAAAATGCTGAGGGCCAACAAGAGTCTCCGAGGTGCAATAATTTCC
AAGACCAAATCGACTATGCGTCAGTGGTTGATGGCACGATAGCTGAGCATCAAAACACGGGGCCAGTCTTCCTACCATGT
GGCGTCTTTCCACCGTACAGGAACTTGATGACGGGCAACCAGCAGCCTGCCACCAATGCACCACCGGTTCAGCCAACGAC
AGCAGTTTCAACTCCAGCACCAGGTGCACCTTCGTCGGCACAGAGGCATATGGTTAATCCTCGTGTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis