Browse Element(s) Details


OsAffx.14681.1.S1_at

Description tigr:9633.m01227
TID=OsAffx.14681.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1408011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14034Os.16349.1.S1_at10/115+7824648..7825593expressed protein
LOC_Os05g14040OsAffx.26875.1.S1_at7/115+7829161..7829576D111/G-patch domain-containing protein, putative
LOC_Os05g14050NANA5+7832249..7834826hypothetical protein
LOC_Os05g14060OsAffx.11259.1.S1_at3/115+7835297..7838058retrotransposon protein, putative, unclassified
LOC_Os05g14060OsAffx.1585.1.S1_at2/115+7835297..7838058retrotransposon protein, putative, unclassified
LOC_Os05g14060OsAffx.22850.1.S1_x_at1/115+7835297..7838058retrotransposon protein, putative, unclassified
LOC_Os05g14060OsAffx.17107.1.S1_at1/115+7835297..7838058retrotransposon protein, putative, unclassified
LOC_Os05g14070OsAffx.14680.1.S1_at11/115+7842128..7843086hypothetical protein
LOC_Os05g14080OsAffx.14681.1.S1_at11/115+7843586..7845054hypothetical protein
LOC_Os05g14090OsAffx.13127.1.S1_at1/115+7847517..7852292retrotransposon protein, putative, unclassified
LOC_Os05g14090OsAffx.13127.1.S1_x_at1/115+7847517..7852292retrotransposon protein, putative, unclassified
LOC_Os05g14090OsAffx.22699.1.S1_x_at1/115+7847517..7852292retrotransposon protein, putative, unclassified
LOC_Os05g14100Os.31845.1.S1_x_at1/115+7853969..7856906hypothetical protein
LOC_Os05g14110NANA5+7861728..7868119transposon protein, putative, unclassified
LOC_Os05g14120OsAffx.31069.1.S1_x_at1/115+7868733..7871740hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14681.1.S1_at--636--5931Chr05:7843729..7843753 (25 bp)
GAGCACGGGCACTCAATCAGACAAA
LOC_Os05g14080
OsAffx.14681.1.S1_at--838--831Chr05:7843757..7843781 (25 bp)
ATGGAGTGTTCCAACGTCCAGACGT
LOC_Os05g14080
OsAffx.14681.1.S1_at--412--5711Chr05:7843777..7843801 (25 bp)
GACGTTCAACGAAAGCAAACCATTA
LOC_Os05g14080
OsAffx.14681.1.S1_at--1045--3211Chr05:7843968..7843990 (23 bp)
CAAGATTATGACATGACCGACGACG
LOC_Os05g14080
OsAffx.14681.1.S1_at--183--5831Chr05:7843980..7844004 (25 bp)
GACCGACGACGATATTTGTGCTCAA
LOC_Os05g14080
OsAffx.14681.1.S1_at--459--3091Chr05:7844010..7844034 (25 bp)
AATAGAGACATCGTCATCAACTGAT
LOC_Os05g14080
OsAffx.14681.1.S1_at--1138--9591Chr05:7844023..7844047 (25 bp)
TCATCAACTGATGTGCTGGTCAAAA
LOC_Os05g14080
OsAffx.14681.1.S1_at--684--2991Chr05:7844050..7844074 (25 bp)
AATGATATAGCTCCGAAGCAAGATC
LOC_Os05g14080
OsAffx.14681.1.S1_at--391--2731Chr05:7844065..7844089 (25 bp)
AAGCAAGATCAACTATTACCCATAT
LOC_Os05g14080
OsAffx.14681.1.S1_at--366--6311Chr05:7844092..7844116 (25 bp)
GATGAGAACGAATACCTAGATGACA
LOC_Os05g14080
OsAffx.14681.1.S1_at--1007--10851Chr05:7844652..7844676 (25 bp)
TTGGTATTTAGCTGTCATCAACGCA
LOC_Os05g14080
Target Sequence 
GAGCACGGGCACTCAATCAGACAAAAACATGGAGTGTTCCAACGTCCAGACGTTCAACGAAAGCAAACCATTATTACACA
ATAACCAAATATACAATTATCTCCCACAAGATTATGACATGACCGACGACGATATTTGTGCTCAAATAACAATAGAGACA
TCGTCATCAACTGATGTGCTGGTCAAAATAAATGATATAGCTCCGAAGCAAGATCAACTATTACCCATATTAGATGAGAA
CGAATACCTAGATGACAATATTTACATTCCAGTAAACATAGAAAACAACCATTGGTATTTAGCTGTCATCAACGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis