Browse Element(s) Details


Os.16381.1.S1_a_at

Description gb:AK111611.1
DB_XREF= gi:37988274
TID=Os.16381.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16381 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DP protein (B1144G04.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013105I18, full insert sequence.
FL= gb:AY224529.1 gb:AK111611.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4870011/11Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os09g301501/11Protein kinase G11A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48670OsAffx.19542.3.S1_x_at3/111+28227314..28231536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g48680Os.27644.1.S1_at11/111+28233459..28247798voltage-dependent calcium channel protein TPC1, putative, expressed
LOC_Os01g48680Os.27644.1.S1_s_at9/111+28233459..28247798voltage-dependent calcium channel protein TPC1, putative, expressed
LOC_Os01g48690Os.4701.1.S1_at11/111+28249166..28251184ribosomal protein S20 containing protein, expressed
LOC_Os01g48690Os.53241.1.S1_at11/111+28249166..28251184ribosomal protein S20 containing protein, expressed
LOC_Os01g48700Os.16381.1.S1_a_at11/111+28251750..28255281Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os01g48710Os.36709.1.S1_x_at11/111+28256959..28257798heavy metal-associated domain containing protein, expressed
LOC_Os01g48710Os.36709.1.S1_at11/111+28256959..28257798heavy metal-associated domain containing protein, expressed
LOC_Os01g48720Os.49113.1.S1_s_at11/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48720Os.48002.1.A1_x_at11/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48720Os.49113.1.S1_at9/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000082biological_processG1/S transition of mitotic cell cycle
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16381.1.S1_a_at--716--5372Chr09:18340738..18341236 (25 bp)
GAAGAAGCTTCTCCAGGAAATTGAA
LOC_Os09g30150
Os.16381.1.S1_a_at--306--1531Chr01:28252797..28252818 (22 bp)
AGCAGTTTGATGACCTTCAGAATAT
LOC_Os01g48700
Os.16381.1.S1_a_at--457--5231Chr01:28252778..28252802 (25 bp)
GAATATTACATTACGCAACCAGGCT
LOC_Os01g48700
Os.16381.1.S1_a_at--913--2631Chr01:28252762..28252786 (25 bp)
AACCAGGCTAGTCAGAGGCCAGCAG
LOC_Os01g48700
Os.16381.1.S1_a_at--845--5571Chr01:28252738..28252762 (25 bp)
GAAAGTGTTAATGGCATCCTCCTTC
LOC_Os01g48700
Os.16381.1.S1_a_at--411--9271Chr01:28252722..28252746 (25 bp)
TCCTCCTTCCGTTCTTATTGATCAA
LOC_Os01g48700
Os.16381.1.S1_a_at--1002--31Chr01:28252261..28252730 (25 bp)
ATTGATCAAGACATCCCGAAAAGCA
LOC_Os01g48700
Os.16381.1.S1_a_at--448--2831Chr01:28252206..28252230 (25 bp)
AAGTTTGCACGGTTCGACTTCAACG
LOC_Os01g48700
Os.16381.1.S1_a_at--666--6691Chr01:28252115..28252219 (25 bp)
GTTCGACTTCAACGGTGCACCATTC
LOC_Os01g48700
Os.16381.1.S1_a_at--964--1911Chr01:28252104..28252125 (22 bp)
ACGGTGCACCATTCACCATGCATGA
LOC_Os01g48700
Os.16381.1.S1_a_at--489--372Chr07:12463645..12463664 (20 bp)
ATCAATCCTTGAAGCCATCAGGCGT
NONE
Target Sequence 
GAAGAAGCTTCTCCAGGAAATTGAAAAGCAGTTTGATGACCTTCAGAATATTACATTACGCAACCAGGCTAGTCAGAGGC
CAGCAGAAAGTGTTAATGGCATCCTCCTTCCGTTCTTATTGATCAAGACATCCCGAAAAGCAAGGGTGGAAATTGAGATT
TCGGAAGATTCNAAGTTTGCACGGTTCGACTTCAACGGTGCACCATTCACCATGCATGATGATGTATCAATCCTTGAAGC
CATCAGGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16381.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis