Browse Element(s) Details


Os.16483.2.S1_x_at

Description gb:NM_188984.1
DB_XREF= gi:34905051
TID=Os.16483.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.16483 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0686C03.8 (P0686C03.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0686C03.8 (P0686C03.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4035011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40310OsAffx.29607.1.S1_x_at11/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.5.S1_x_at10/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.3.S1_x_at8/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.2.S1_s_at5/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40320Os.45902.1.A1_x_at1/118+25395399..25398189hypothetical protein
LOC_Os08g40330OsAffx.29608.2.S1_at11/118+25401922..25403003Sulfotransferase domain containing protein
LOC_Os08g40330OsAffx.29608.3.S1_at11/118+25401922..25403003Sulfotransferase domain containing protein
LOC_Os08g40330OsAffx.29608.2.S1_s_at11/118+25401922..25403003Sulfotransferase domain containing protein
LOC_Os08g40340OsAffx.22004.1.S1_at11/118+25406605..25409319retrotransposon protein, putative, unclassified
LOC_Os08g40340OsAffx.31069.1.S1_x_at1/118+25406605..25409319retrotransposon protein, putative, unclassified
LOC_Os08g40350Os.16483.2.S1_x_at11/118+25411254..25415947expressed protein
LOC_Os08g40350Os.43203.1.S1_x_at9/118+25411254..25415947expressed protein
LOC_Os08g40360OsAffx.9815.1.S1_at11/118+25418494..25424508transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g40370NANA8+25425286..25430466retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40380OsAffx.17432.1.S1_at11/118+25431600..25432598Sulfotransferase domain containing protein, expressed
LOC_Os08g40380OsAffx.29608.1.S1_s_at1/118+25431600..25432598Sulfotransferase domain containing protein, expressed
LOC_Os08g40390OsAffx.29608.4.S1_at11/118+25434000..25434975Sulfotransferase domain containing protein
LOC_Os08g40390OsAffx.29608.1.S1_s_at11/118+25434000..25434975Sulfotransferase domain containing protein
LOC_Os08g40390OsAffx.29608.2.S1_s_at1/118+25434000..25434975Sulfotransferase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16483.2.S1_x_at--974--8075Chr08:24064555..24064579 (25 bp)
GGAGCCTTCCCGTGCAAACCGATCG
NONE
Os.16483.2.S1_x_at--158--10655Chr08:24064561..24064585 (25 bp)
TTCCCGTGCAAACCGATCGACGACG
NONE
Os.16483.2.S1_x_at--255--6395Chr08:23173308..23173332 (25 bp)
GATCGACGACGACCGCTGCACCAGA
NONE
Os.16483.2.S1_x_at--692--9414Chr08:24064616..24064640 (25 bp)
TCGTCGTCGACAGCCGCCGCAACGA
NONE
Os.16483.2.S1_x_at--1060--7215Chr08:24064660..24064684 (25 bp)
GTCGACGACGACCGCTGCACCAGAT
NONE
Os.16483.2.S1_x_at--1061--7211Chr08:25415661..25415685 (25 bp)
GTCGACGACTTCCACTGCATCGGAG
LOC_Os08g40350
Os.16483.2.S1_x_at--572--5791Chr08:25415658..25415682 (25 bp)
GACGACTTCCACTGCATCGGAGCCG
LOC_Os08g40350
Os.16483.2.S1_x_at--575--3916Chr08:24064799..24064823 (25 bp)
CGGAGCCGGGTACCCCATCGACAAG
NONE
Os.16483.2.S1_x_at--906--3535Chr08:24064814..24064838 (25 bp)
CATCGACAAGGTCCCTGCACCGTCG
NONE
Os.16483.2.S1_x_at--896--1771Chr08:25415531..25415555 (25 bp)
ACCGTCGCCGTACCTAGCTGATGGG
LOC_Os08g40350
Os.16483.2.S1_x_at--1038--7231Chr08:25415528..25415552 (25 bp)
GTCGCCGTACCTAGCTGATGGGAAG
LOC_Os08g40350
Target Sequence 
GGAGCCTTCCCGTGCAAACCGATCGACGACGACCGCTGCACCAGATCCGTCCCCTACTTCCTCGTCGTCGACAGCCGCCG
CAACGACGCCTTCCGCTGCAACCCCGTCGACGACGACCGCTGCACCAGATCCTTCCCCCACTACGCCGTCGACGACTTCC
ACTGCATCGGAGCCGCCATCTCCCACAACACCGTTGACGCCTACCGCCGCACCGGAGCCGGGTACCCCATCGACAAGGTC
CCTGCACCGTCGCCGTACCTAGCTGATGGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16483.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis