Browse Element(s) Details


Os.16536.1.S1_at

Description gb:AK068371.1
DB_XREF= gi:32978389
TID=Os.16536.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16536 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Homo sapiens chromosome 5, LOC134510 (P0648C09.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013147C22, full insert sequence.
FL= gb:AK068371.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6545011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65410Os.5420.1.S1_at11/111+38289408..38293657Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os01g65420Os.37438.1.S1_at11/111+38295821..38297183expressed protein
LOC_Os01g65440Os.26484.1.S1_at11/111+38309698..38312558universal stress protein family protein, expressed
LOC_Os01g65450Os.16536.1.S1_at11/111+38313689..38318627expressed protein
LOC_Os01g65460Os.9892.1.S1_a_at11/111+38321362..38328433Beta-galactosidase precursor, putative, expressed
LOC_Os01g65460Os.9892.2.S1_at11/111+38321362..38328433Beta-galactosidase precursor, putative, expressed
LOC_Os01g65460Os.42688.1.S1_x_at9/111+38321362..38328433Beta-galactosidase precursor, putative, expressed
LOC_Os01g65470OsAffx.31174.5.S1_x_at11/111+38332742..38333489hypothetical protein
LOC_Os01g65470OsAffx.31174.4.S1_x_at5/111+38332742..38333489hypothetical protein
LOC_Os01g65480Os.8452.1.S1_at11/111+38336490..38339127DnaJ domain containing protein, expressed
LOC_Os01g65490Os.32122.1.S1_x_at11/111+38339648..38341148expressed protein
LOC_Os01g65490Os.32122.1.S1_at11/111+38339648..38341148expressed protein
LOC_Os01g65490Os.32122.2.S1_at1/111+38339648..38341148expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16536.1.S1_at--1097--3831Chr01:38314346..38314370 (25 bp)
CTGCTCTTATGGATCACTTGGCGAT
LOC_Os01g65450
Os.16536.1.S1_at--408--9811Chr01:38314319..38314343 (25 bp)
TAACTGTGCAATCTGAAAACCTGTC
LOC_Os01g65450
Os.16536.1.S1_at--330--2511Chr01:38314285..38314309 (25 bp)
AACTTTTGATTGCAAGCCTCTTGGT
LOC_Os01g65450
Os.16536.1.S1_at--272--9591Chr01:38314267..38314291 (25 bp)
TCTTGGTGTCATTTGGGCTCAGTTC
LOC_Os01g65450
Os.16536.1.S1_at--860--951Chr01:38314063..38314087 (25 bp)
AGGACCCATTCAAACAGAGGCACTG
LOC_Os01g65450
Os.16536.1.S1_at--636--3091Chr01:38314014..38314038 (25 bp)
AATACCTGCTTACCATTGCAGAGCT
LOC_Os01g65450
Os.16536.1.S1_at--292--10071Chr01:38313965..38313989 (25 bp)
TAGTGCATGGGAATCCTTCACAGAA
LOC_Os01g65450
Os.16536.1.S1_at--101--5851Chr01:38313818..38313842 (25 bp)
GACCATGACAACCACAATGCTACTT
LOC_Os01g65450
Os.16536.1.S1_at--862--5231Chr01:38313792..38313816 (25 bp)
GAATACTCTACATATATCCCTGCGT
LOC_Os01g65450
Os.16536.1.S1_at--600--171Chr01:38313730..38313754 (25 bp)
ATTTTTTAACCTTCCTGTGTGCATT
LOC_Os01g65450
Os.16536.1.S1_at--1114--7451Chr01:38313714..38313738 (25 bp)
GTGTGCATTTCAACGTTAAACCTAG
LOC_Os01g65450
Target Sequence 
CTGCTCTTATGGATCACTTGGCGATGATAACTGTGCAATCTGAAAACCTGTCAGAAAAGAAAACTTTTGATTGCAAGCCT
CTTGGTGTCATTTGGGCTCAGTTCCCCGAGTACAATGAAACAAACACAATCATGTTTGATGACCTCAGAAGGAACTTTGT
CATGAATCCACAGAATGGTCTTGTGATCAAACCATACAAGAGGACCCATTCAAACAGAGGCACTGATCAAGAGCTGGTGA
AGCTTACNACAATACCTGCTTACCATTGCAGAGCTAGAAGATTTGAGCAAGCTTGACCATAGTGCATGGGAATCCTTCAC
AGAAGAAAATGCCAAGAGACGCAGACACAGGTAGTTTTTNCTCAGTGTATTGATCAGCAGGAAAGAAAAGTTCGCCCTCC
TTTTTGNTCACTGCTATTAACTGCATAGACTAGAATATCTTGGATTGACCATGACAACCACAATGCTACTTAGAATACTC
TACATATATCCCTGCGTTCGATCTGCACAAAAACATTTCCAAACTGCAACAGTTATTTTTTAACCTTCCTGTGTGCATTT
CAACGTTAAACCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis