Browse Element(s) Details


Os.16539.1.S1_at

Description gb:AK065511.1
DB_XREF= gi:32975529
TID=Os.16539.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16539 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013028N17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013028N17, full insert sequence.
FL= gb:AK065511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0235011/11expressed protein
LOC_Os12g354601/11AT hook motif-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02310NANA8+874322..876939hypothetical protein
LOC_Os08g02320OsAffx.16788.1.S1_at9/118+882466..883768hypothetical protein
LOC_Os08g02330Os.6253.1.S1_a_at11/118+886583..892726RNA-binding protein, putative, expressed
LOC_Os08g02330OsAffx.28987.1.S1_x_at9/118+886583..892726RNA-binding protein, putative, expressed
LOC_Os08g02330OsAffx.28987.1.S1_at8/118+886583..892726RNA-binding protein, putative, expressed
LOC_Os08g02340Os.12280.1.S1_x_at11/118+897776..89935060S acidic ribosomal protein P1, putative, expressed
LOC_Os08g02340Os.57447.1.S1_x_at6/118+897776..89935060S acidic ribosomal protein P1, putative, expressed
LOC_Os08g02350OsAffx.28988.1.S1_at11/118+900179..928280expressed protein
LOC_Os08g02350Os.16539.1.S1_at11/118+900179..928280expressed protein
LOC_Os08g02350OsAffx.21992.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02350OsAffx.30172.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02350Os.20190.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02360Os.47354.1.A1_at11/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02360OsAffx.9177.1.S1_x_at1/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02360Os.40400.1.S1_at1/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02370Os.27951.1.S1_at11/118+934508..938062galactosyltransferase family protein, putative, expressed
LOC_Os08g02380Os.18328.1.S1_s_at11/118+941334..946233Kinesin motor domain containing protein, expressed
LOC_Os08g02380OsAffx.16789.1.S1_at11/118+941334..946233Kinesin motor domain containing protein, expressed
LOC_Os08g02390Os.27914.1.S1_at11/118+947342..949799RNA recognition motif family protein, expressed
LOC_Os08g02400OsAffx.16790.1.S1_s_at11/118+950035..95232240S ribosomal protein S13, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16539.1.S1_at--53--10091Chr08:918339..918363 (25 bp)
TAGGGTGAGTGTTCTATTGTACACC
LOC_Os08g02350
Os.16539.1.S1_at--480--8751Chr08:918322..918346 (25 bp)
TGTACACCCATGTTCTATTGCTTGG
LOC_Os08g02350
Os.16539.1.S1_at--634--3511Chr08:918314..918338 (25 bp)
CATGTTCTATTGCTTGGGAGGATAA
LOC_Os08g02350
Os.16539.1.S1_at--155--9071Chr08:918274..918298 (25 bp)
TGCATTATGCATATTATGTGCTTCC
LOC_Os08g02350
Os.16539.1.S1_at--251--4191Chr08:918249..918273 (25 bp)
CCCTGCACTAACGTTATCTCATTTT
LOC_Os08g02350
Os.16539.1.S1_at--4--10731Chr08:918212..918236 (25 bp)
TTGCATTCACAGTGCATCAACTTGT
LOC_Os08g02350
Os.16539.1.S1_at--760--5972Chr08:918106..918130 (25 bp)
GAGAACTTTATCAGTGATCGTATAA
LOC_Os08g02350
Os.16539.1.S1_at--1051--6372Chr08:918091..918115 (25 bp)
GATCGTATAAATTCAACAACTTGCA
LOC_Os08g02350
Os.16539.1.S1_at--1015--5172Chr12:21525685..21525709 (25 bp)
GCAAGGTAGGTACGGTTTTGATACA
LOC_Os12g35460
Os.16539.1.S1_at--167--2051Chr08:917971..917995 (25 bp)
ACTTTTGACAATATACTAGCACGGA
LOC_Os08g02350
Os.16539.1.S1_at--630--1491Chr08:917954..917978 (25 bp)
AGCACGGATGTGTATAAGTATGTTT
LOC_Os08g02350
Target Sequence 
TAGGGTGAGTGTTCTATTGTACACCCATGTTCTATTGCTTGGGAGGATAAACATAAACATATTGATGCATTATGCATATT
ATGTGCTTCCCCCTGCACTAACGTTATCTCATTTTGTAATGAGTAAATTGCATTCACAGTGCATCAACTTGTCAGGTGGG
TGCAATTTGGTGCAATAACTTGAAAAATGAGCGTTCTAGTGCAACAACTTGGCATGTATGTGCAATTTAATATGAGAACT
TTATCAGTGATCGTATAAATTCAACAACTTGCAAGGTAGGTACGGTTTTGATACAATAAATTAAAAGGTTATGCAACAAC
TTAATTATTTGGAGCATTTTTTTTATATAAATTCAATTTTTAAGTACTACTTTTGACAATATACTAGCACGGATGTGTAT
AAGTATGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis