Browse Element(s) Details


Os.16563.1.S1_at

Description gb:AK105640.1
DB_XREF= gi:32990849
TID=Os.16563.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.16563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-E05, full insert sequence.
FL= gb:AK105640.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3884011/11pre-mRNA processing protein PRP39, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38790Os.8390.1.S1_s_at11/117+23272556..23274886Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os07g38790OsAffx.16618.1.S1_x_at11/117+23272556..23274886Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os07g38800Os.12660.1.S2_at11/117+23276784..23279409lectin receptor kinase 7, putative, expressed
LOC_Os07g38800Os.12660.1.S1_at11/117+23276784..23279409lectin receptor kinase 7, putative, expressed
LOC_Os07g38810Os.17201.1.S1_at11/117+23280907..23283254lectin protein kinase, putative, expressed
LOC_Os07g38820OsAffx.28817.1.S1_at11/117+23287584..23290095Lectin receptor-type protein kinase, putative
LOC_Os07g38830Os.27477.1.S1_at11/117+23291668..23295109hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os07g38840Os.16563.1.S1_at11/117+23297351..23300519pre-mRNA processing protein PRP39, putative, expressed
LOC_Os07g38850Os.8566.1.S1_at11/117+23300758..23308009UbiA prenyltransferase family protein, putative, expressed
LOC_Os07g38860NANA7+23312788..23317460indole-3-acetic acid-amido synthetase GH3.1, putative
LOC_Os07g38870OsAffx.16619.1.S1_at11/117+23320550..23321350hypothetical protein
LOC_Os07g38880NANA7+23322811..23323176hypothetical protein
LOC_Os07g38890Os.54822.1.S1_at11/117+23323505..23325533indole-3-acetic acid-amido synthetase GH3.1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16563.1.S1_at--343--3891Chr07:23299638..23299662 (25 bp)
CTGGGCGTCGGGATACGCAACGACT
LOC_Os07g38840
Os.16563.1.S1_at--607--7191Chr07:23299644..23299668 (25 bp)
GTCGGGATACGCAACGACTGCGACA
LOC_Os07g38840
Os.16563.1.S1_at--1000--971Chr07:23299798..23299822 (25 bp)
AGGAGTACGACATCGGCCGCGAGAT
LOC_Os07g38840
Os.16563.1.S1_at--47--5411Chr07:23299871..23299895 (25 bp)
GAAGCTCGTCGAGAGCGTCTTCGTC
LOC_Os07g38840
Os.16563.1.S1_at--686--9411Chr07:23299876..23299900 (25 bp)
TCGTCGAGAGCGTCTTCGTCGGCGA
LOC_Os07g38840
Os.16563.1.S1_at--630--3131Chr07:23299963..23299987 (25 bp)
AATTTTGGCGGTTCTCAAATTTCAG
LOC_Os07g38840
Os.16563.1.S1_at--654--7891Chr07:23299972..23299996 (25 bp)
GGTTCTCAAATTTCAGACGACGACA
LOC_Os07g38840
Os.16563.1.S1_at--800--1851Chr07:23299991..23300015 (25 bp)
ACGACACGCGGTGATGACGAGTGAA
LOC_Os07g38840
Os.16563.1.S1_at--1138--7671Chr07:23300030..23300054 (25 bp)
GGGTTTCTCAAATTCAAATCAGATT
LOC_Os07g38840
Os.16563.1.S1_at--967--3071Chr07:23300046..23300070 (25 bp)
AATCAGATTGTTACGGAGCAATTCT
LOC_Os07g38840
Os.16563.1.S1_at--930--1871Chr07:23300076..23300100 (25 bp)
ACGATGACAGAGTGCATGGTGAAAT
LOC_Os07g38840
Target Sequence 
CTGGGCGTCGGGATACGCAACGACTGCGACAGGGGGAGCAGGCTGGACACCGGCGGCGCCGGGCGGTGCGAGGTGGTGTC
GGCGGAGTACCTCGGCGGCGGCGGCGGCGGCGTGGCCGAGCCGACGTGGCTGCTGTTCGACCGGGAGTGGGGGCCGAGGG
AGGAGTACGACATCGGCCGCGAGATCAACCGCGTGGCGAAGCTGCTNCCGCGGTCGACGAGGGAGCGGCTGCGGAAGCTC
GTCGAGAGCGTCTTCGTCGGCGAGGGCCCGACGGGGCCGAGGATGAAGGGCAGCTGGAGAAACGACGAGAGGGAGNCCAA
GTAAAAATTTTGGCGGTTCTCAAATTTCAGACGACGACACGCGGTGATGACGAGTGAAAAGTTTATTATATGGGGTTTCT
CAAATTCAAATCAGATTGTTACGGAGCAATTCTGAAAAACGATGACAGAGTGCATGGTGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis