Browse Element(s) Details


Os.16689.1.S1_at

Description gb:AK065462.1
DB_XREF= gi:32975480
TID=Os.16689.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16689 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013021H17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013021H17, full insert sequence.
FL= gb:AK065462.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1059011/11somatic embryogenesis related protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10540Os.53165.1.S1_at11/113+5352085..5358532F-box domain containing protein, expressed
LOC_Os03g10540OsAffx.3188.1.S1_at5/113+5352085..5358532F-box domain containing protein, expressed
LOC_Os03g10550OsAffx.12809.1.S1_at9/113+5359417..5360291hypothetical protein
LOC_Os03g10570OsAffx.20947.1.S1_x_at2/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10570Os.9810.1.S1_at1/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10570OsAffx.20947.1.S1_at1/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10580NANA3+5370007..5372163meiotic asynaptic mutant 1, putative
LOC_Os03g10590Os.16689.1.S1_at11/113+5373048..5376102somatic embryogenesis related protein, putative, expressed
LOC_Os03g10600Os.24224.1.A1_at11/113+5380075..5385984expressed protein
LOC_Os03g10600OsAffx.3190.1.S1_at2/113+5380075..5385984expressed protein
LOC_Os03g10610Os.11595.1.S2_at2/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.10155.1.S1_at1/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.13325.1.S1_at1/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.10155.1.S1_x_at1/113+5397127..5399081retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16689.1.S1_at--291--8631Chr03:5373607..5373631 (25 bp)
TGAGGGACCTTTCGTAAGGCCAGAT
LOC_Os03g10590
Os.16689.1.S1_at--812--5391Chr03:5373383..5373407 (25 bp)
GAAGCCCTACTCCTAAGACCGAAGA
LOC_Os03g10590
Os.16689.1.S1_at--579--51Chr03:5373334..5373358 (25 bp)
ATTGTTGGCGCTGTAGCTACTGCTT
LOC_Os03g10590
Os.16689.1.S1_at--369--9071Chr03:5373314..5373338 (25 bp)
TGCTTGGGATTGCTTTCTGGTCATA
LOC_Os03g10590
Os.16689.1.S1_at--690--6431Chr03:5373269..5373293 (25 bp)
GATCATCTACTTGGTGTCATTGGTG
LOC_Os03g10590
Os.16689.1.S1_at--842--6651Chr03:5373245..5373269 (25 bp)
GTTGAATGCTGTCAGACCGTCTATC
LOC_Os03g10590
Os.16689.1.S1_at--1093--10131Chr03:5373224..5373248 (25 bp)
TATCCTGATGCTGCGTCACTCAAAT
LOC_Os03g10590
Os.16689.1.S1_at--284--4651Chr03:5373212..5373236 (25 bp)
GCGTCACTCAAATGCAGCTGGCTGA
LOC_Os03g10590
Os.16689.1.S1_at--158--2991Chr03:5373148..5373172 (25 bp)
AATGTGCCTGATATTCTCGGTTTAC
LOC_Os03g10590
Os.16689.1.S1_at--824--6071Chr03:5373094..5373118 (25 bp)
GAGTAAACAATTTGCCTCCCATTAA
LOC_Os03g10590
Os.16689.1.S1_at--234--3691Chr03:5373064..5373088 (25 bp)
CTATCGAAGGCCGAAGTGTTCTTGT
LOC_Os03g10590
Target Sequence 
TGAGGGACCTTTCGTAAGGCCAGATGGTCAAGGTATGAGGAGGGGATTTTCTGATCACAGGAATGCTGGCCAAAGAAATG
GCTATGATTCATGGGGGCGTTTTGCTGGTAGAGGAAGGGGCAGATACAGGTTTAACAACTCATATGATGGGCGAAACAGC
ATGCACCAGGCTGCTGGTGATCAAGCAGAAAAATGGAAGCATGACCTTTATGAACAAACAAATAGAAGCCCTACTCCTAA
GACCGAAGAAGAGCAGATTGCAAAAATTGAAGCATTGTTGGCGCTGTAGCTACTGCTTGGGATTGCTTTCTGGTCATATT
TGCAATGGCTAGATAGGTGATCATCTACTTGGTGTCATTGGTGTTGAATGCTGTCAGACCGTCTATCCTGATGCTGCGTC
ACTCAAATGCAGCTGGCTGAATTTTGGGGTTGACAATGTTTTCTTCTTCCATTTAAGAAAATGTGCCTGATATTCTCGGT
TTACTTGATGTAGGATCCATGAACTAAGAACAAGAGTAAACAATTTGCCTCCCATTAAAATGCCTATCGAAGGCCGAAGT
GTTCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis