Browse Element(s) Details


Os.16733.1.S1_at

Description gb:AK058619.1
DB_XREF= gi:32968637
TID=Os.16733.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16733 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-B06, full insert sequence.
FL= gb:AK058619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1575011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15704Os.53480.1.S1_x_at7/112+8850621..8851895expressed protein
LOC_Os02g15704Os.56035.1.S1_at7/112+8850621..8851895expressed protein
LOC_Os02g15704Os.27237.3.A1_x_at1/112+8850621..8851895expressed protein
LOC_Os02g15710OsAffx.2629.1.S1_at11/112+8854325..8854983Chemocyanin precursor, putative
LOC_Os02g15720OsAffx.4864.1.S1_at2/112+8856564..8862454hypothetical protein
LOC_Os02g15720OsAffx.18048.1.S1_at1/112+8856564..8862454hypothetical protein
LOC_Os02g15720OsAffx.30486.1.S1_at1/112+8856564..8862454hypothetical protein
LOC_Os02g15730OsAffx.24270.1.S1_x_at11/112+8867082..8867538Chemocyanin precursor, putative, expressed
LOC_Os02g15730OsAffx.24270.1.S1_at11/112+8867082..8867538Chemocyanin precursor, putative, expressed
LOC_Os02g15740Os.16163.1.S1_at8/112+8869106..8871518expressed protein
LOC_Os02g15750Os.16733.1.S1_at11/112+8873039..8876439expressed protein
LOC_Os02g15760OsAffx.2630.1.S1_at11/112+8879440..8882658Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g15760OsAffx.2630.1.S1_x_at10/112+8879440..8882658Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g15770NANA2+8894493..8895107hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16733.1.S1_at--963--1751Chr02:8875760..8875784 (25 bp)
ACCTGCAGTTAACTCAGCACCAGTA
LOC_Os02g15750
Os.16733.1.S1_at--351--8731Chr02:8875838..8875961 (25 bp)
TTACCCGAATTATCCAGACCTCAAA
LOC_Os02g15750
Os.16733.1.S1_at--185--10531Chr02:8875976..8876000 (25 bp)
TTCACCATCGGCACCATAGGCATAA
LOC_Os02g15750
Os.16733.1.S1_at--627--2811Chr02:8875999..8876023 (25 bp)
AAGTTGCTGAAGACCGAGTTCATCG
LOC_Os02g15750
Os.16733.1.S1_at--1028--6051Chr02:8876014..8876038 (25 bp)
GAGTTCATCGTTGATCTCGACGGCA
LOC_Os02g15750
Os.16733.1.S1_at--932--6411Chr02:8876026..8876050 (25 bp)
GATCTCGACGGCATATCTGTACAAG
LOC_Os02g15750
Os.16733.1.S1_at--716--811Chr02:8876194..8876218 (25 bp)
ATGGTGTATCCAGTTGATGCGTTCT
LOC_Os02g15750
Os.16733.1.S1_at--575--6351Chr02:8876209..8876233 (25 bp)
GATGCGTTCTGATTTTTCGTTTTGT
LOC_Os02g15750
Os.16733.1.S1_at--1085--2771Chr02:8876279..8876303 (25 bp)
AAGAGTTCATGTCCTGTACTATACT
LOC_Os02g15750
Os.16733.1.S1_at--872--7011Chr02:8876294..8876318 (25 bp)
GTACTATACTTGACATGCTTGACGT
LOC_Os02g15750
Os.16733.1.S1_at--322--4931Chr02:8876310..8876334 (25 bp)
GCTTGACGTGTAAATCATCAGCTCA
LOC_Os02g15750
Target Sequence 
ACCTGCAGTTAACTCAGCACCAGTAGCAGAAGCCGCCCCAGAGGCGGCGCCACCTGCAGCTCCGAGACCTCTTTCGCCTT
ACCCGAATTATCCAGACCTCAAACCACCATCGTCGCCTTCACCATCGGCACCATAGGCATAAGTTGCTGAAGACCGAGTT
CATCGTTGATCTCGACGGCATATCTGTACAAGATATATATTACCAGGCCTAGAGGAGATGGAATCGAGCTGTTTATATGA
TATCAAAAGGAAGAGTGTTTTGTTGTATCAATATNTAGTCCGATCCTTATATTATCTCATTGGGGGGCAAGTTTTTTTTA
AGTACATCTTTGGGTATGGTGTATCCAGTTGATGCGTTCTGATTTTTCGTTTTGTTTTTCATCTTTTTGCACCTGTAAAT
GTGGGATCACTAGCACTAAAAAGAGTTCATGTCCTGTACTATACTTGACATGCTTGACGTGTAAATCATCAGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis