Browse Element(s) Details


Os.16786.1.S1_at

Description gb:AK068907.1
DB_XREF= gi:32978932
TID=Os.16786.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16786 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002L07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002L07, full insert sequence.
FL= gb:AK068907.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0925011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09220Os.53919.1.S1_at11/112+4740046..4743110Cytochrome P450 family protein, expressed
LOC_Os02g09220Os.54895.1.S1_x_at1/112+4740046..4743110Cytochrome P450 family protein, expressed
LOC_Os02g09230OsAffx.24171.1.S1_at11/112+4747250..4748210hypothetical protein
LOC_Os02g09240Os.54895.1.S1_x_at11/112+4754170..4756280Cytochrome P450 family protein, expressed
LOC_Os02g09240Os.54895.1.S1_at10/112+4754170..4756280Cytochrome P450 family protein, expressed
LOC_Os02g09250Os.16786.1.S1_at11/112+4765148..4767212Cytochrome P450 family protein, expressed
LOC_Os02g09260Os.53919.1.S1_at1/112+4768852..4771021Cytochrome P450 family protein
LOC_Os02g09270Os.24882.1.S1_s_at11/112+4774333..4776354Cytochrome P450 family protein, expressed
LOC_Os02g09280OsAffx.21870.2.S1_x_at3/112+4779347..4780268hypothetical protein
LOC_Os02g09280OsAffx.21870.3.S1_x_at1/112+4779347..4780268hypothetical protein
LOC_Os02g09290OsAffx.24172.1.S1_at11/112+4785232..4787038Cytochrome P450 71D10, putative, expressed
LOC_Os02g09300OsAffx.30486.1.S1_at1/112+4787844..4789274hypothetical protein
LOC_Os02g09300OsAffx.9762.1.S1_at1/112+4787844..4789274hypothetical protein
LOC_Os02g09310OsAffx.24172.2.S1_at11/112+4791454..4793238Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16786.1.S1_at--114--6791Chr02:4766845..4766869 (25 bp)
GTTAGCATGGAGCTTGCTCTAGCCT
LOC_Os02g09250
Os.16786.1.S1_at--45--251Chr02:4766877..4766901 (25 bp)
ATATCATTTCGACTGGGAACTCCCT
LOC_Os02g09250
Os.16786.1.S1_at--1157--5451Chr02:4766893..4766917 (25 bp)
GAACTCCCTAGTGGTGTTGCGCCAA
LOC_Os02g09250
Os.16786.1.S1_at--1056--5271Chr02:4766964..4766988 (25 bp)
GAATGATCTTTACCTGGTTCCAAAG
LOC_Os02g09250
Os.16786.1.S1_at--1114--7271Chr02:4766995..4767019 (25 bp)
GTGCCTCTATAGTTTGGCTCGTAAC
LOC_Os02g09250
Os.16786.1.S1_at--1120--8311Chr02:4767010..4767034 (25 bp)
GGCTCGTAACTGCTTCACACAATAT
LOC_Os02g09250
Os.16786.1.S1_at--571--2231Chr02:4767028..4767052 (25 bp)
ACAATATGTGTCTCCTGTGACCCGT
LOC_Os02g09250
Os.16786.1.S1_at--808--8911Chr02:4767045..4767069 (25 bp)
TGACCCGTACCTGCCAAGTAGCGAT
LOC_Os02g09250
Os.16786.1.S1_at--1129--6951Chr02:4767062..4767086 (25 bp)
GTAGCGATCATGAGCATTCCATTGT
LOC_Os02g09250
Os.16786.1.S1_at--241--91Chr02:4767077..4767101 (25 bp)
ATTCCATTGTGTTTCATGCCCTTAT
LOC_Os02g09250
Os.16786.1.S1_at--212--611Chr02:4767092..4767116 (25 bp)
ATGCCCTTATGGTGTTATGCTGCTC
LOC_Os02g09250
Target Sequence 
GTTAGCATGGAGCTTGCTCTAGCCTCATTGCTATATCATTTCGACTGGGAACTCCCTAGTGGTGTTGCGCCAAGCAATCT
AGACATGGAAGAGGAGATGGGTATCACCATCCGAAGGAAGAATGATCTTTACCTGGTTCCAAAGGTCCNTGTGCCTCTAT
AGTTTGGCTCGTAACTGCTTCACACAATATGTGTCTCCTGTGACCCGTACCTGCCAAGTAGCGATCATGAGCATTCCATT
GTGTTTCATGCCCTTATGGTGTTATGCTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis