Browse Element(s) Details


Os.16809.1.S1_at

Description gb:AK102527.1
DB_XREF= gi:32987736
TID=Os.16809.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033096C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033096C05, full insert sequence.
FL= gb:AK102527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0998011/11Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09950Os.13861.1.S1_at2/119+5413271..5418455retrotransposon protein, putative, unclassified, expressed
LOC_Os09g09960NANA9+5419149..5423600retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09970Os.46314.2.S1_x_at6/119+5425226..5427804retrotransposon protein, putative, unclassified
LOC_Os09g09970Os.47114.1.S1_x_at1/119+5425226..5427804retrotransposon protein, putative, unclassified
LOC_Os09g09970Os.10731.2.A1_at1/119+5425226..5427804retrotransposon protein, putative, unclassified
LOC_Os09g09980Os.16809.1.S1_at11/119+5429895..5432234Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os09g09990Os.14919.1.S1_at5/119+5434182..5441247transposon protein, putative, Mutator sub-class
LOC_Os09g09990Os.56216.1.S1_at2/119+5434182..5441247transposon protein, putative, Mutator sub-class
LOC_Os09g09990OsAffx.29313.1.S1_at1/119+5434182..5441247transposon protein, putative, Mutator sub-class
LOC_Os09g10000Os.53295.1.A1_at11/119+5444591..5449231cation exchanger, putative, expressed
LOC_Os09g10000OsAffx.17627.1.S1_s_at11/119+5444591..5449231cation exchanger, putative, expressed
LOC_Os09g10000OsAffx.17627.1.S1_at7/119+5444591..5449231cation exchanger, putative, expressed
LOC_Os09g10010NANA9+5453170..5453706expressed protein
LOC_Os09g10020Os.17937.3.S1_at1/119+5455318..5460131transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16809.1.S1_at--752--2611Chr09:5431657..5431681 (25 bp)
AACCCTGCCCAGAATCTTGATAATG
LOC_Os09g09980
Os.16809.1.S1_at--456--2051Chr09:5431691..5431715 (25 bp)
ACTTAAAGCTTGCTTGCTCTATGGC
LOC_Os09g09980
Os.16809.1.S1_at--806--4811Chr09:5431706..5431730 (25 bp)
GCTCTATGGCTGATTGTACCACACT
LOC_Os09g09980
Os.16809.1.S1_at--596--6971Chr09:5431721..5431745 (25 bp)
GTACCACACTCGACTATGGAGGTTC
LOC_Os09g09980
Os.16809.1.S1_at--191--831Chr09:5431736..5431760 (25 bp)
ATGGAGGTTCCTGCTATGGCATTGG
LOC_Os09g09980
Os.16809.1.S1_at--209--1171Chr09:5431909..5431933 (25 bp)
AGTAAAAGCTCTGCAGTTTCCTCCT
LOC_Os09g09980
Os.16809.1.S1_at--142--10311Chr09:5431977..5432001 (25 bp)
TTTCTGGGTGTTCATGTACCTTAGA
LOC_Os09g09980
Os.16809.1.S1_at--851--2991Chr09:5432001..5432025 (25 bp)
AATGATGGGTTCTGTCTGACGTCGA
LOC_Os09g09980
Os.16809.1.S1_at--913--4951Chr09:5432049..5432073 (25 bp)
GCATACTTTCTGTGGCCTTGTGTTA
LOC_Os09g09980
Os.16809.1.S1_at--751--8151Chr09:5432100..5432124 (25 bp)
GGAAACCACGGCATTCTAGCCATAT
LOC_Os09g09980
Os.16809.1.S1_at--607--3851Chr09:5432193..5432217 (25 bp)
CTGAAATTTCTCCTGATTCTGAAGA
LOC_Os09g09980
Target Sequence 
AACCCTGCCCAGAATCTTGATAATGTTGCAAATCACTTAAAGCTTGCTTGCTCTATGGCTGATTGTACCACACTCGACTA
TGGAGGTTCCTGCTATGGCATTGGAGAGAAGGCCANCGTTTCTTATGCTTTCAACAGCTACTATCAGCAACAGAAGCAGG
ATGCTAAGAGTTGNGANTTNGATGGGAATGGGATGATAACTTACCTTGATCCATCCATGGGCGAGTGNCGCTTTCTTGTT
GGAATTGATGATAGTAAAAGCTCTGCAGTTTCCTCCTGTGGCTGCGGTTGTGGGGTTTGTTGTGGGGTGTGGGTTCTATT
TTTCTGGGTGTTCATGTACCTTAGAATGATGGGTTCTGTCTGACGTCGAAAATGATCTGTTAGGACACNTCGGCATACTT
TCTGTGGCCTTGTGTTATAGAAGGTATTCTTCTNGTAGATTTAGGAAACCACGGCATTCTAGCCATATATGAAAATTAGA
TTGTNGTGAGATTAGGAAAAGAGANNTTCTAGCCATATATATATNNGAAANTTGATTTGNTNCTGAAATTTCTCCTGATT
CTGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis