Browse Element(s) Details


Os.16822.1.S1_at

Description gb:BI804613
DB_XREF= gi:16577317
DB_XREF=H141F02
CLONE=H141F02
TID=Os.16822.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.16822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0403010/11Signal peptidase subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04000NANA1+1728355..1728747hypothetical protein
LOC_Os01g04010Os.9023.1.S1_x_at11/111+1735670..1736622expressed protein
LOC_Os01g04010Os.9023.1.S1_at11/111+1735670..1736622expressed protein
LOC_Os01g04020Os.4663.1.S1_at11/111+1743218..1745346AP2 domain containing protein, expressed
LOC_Os01g04020Os.4663.1.S2_at11/111+1743218..1745346AP2 domain containing protein, expressed
LOC_Os01g04030Os.16822.1.S1_at10/111+1751134..1754530Signal peptidase subunit family protein, expressed
LOC_Os01g04040NANA1+1754614..1755532Bowman-Birk type wound-induced proteinase inhibitor WIP1 precursor, putative
LOC_Os01g04050Os.3729.1.S1_at11/111+1756956..1757937Bowman-Birk type wound-induced proteinase inhibitor WIP1 precursor, putative, expressed
LOC_Os01g04070OsAffx.22797.1.S1_at11/111+1761836..1765746Leucine Rich Repeat family protein, expressed
LOC_Os01g04080Os.30899.1.S1_at10/111+1768299..1769212expressed protein
LOC_Os01g04090Os.31762.2.S1_x_at11/111+1772846..1774907expressed protein
LOC_Os01g04090Os.31762.1.S1_at11/111+1772846..1774907expressed protein
LOC_Os01g04100Os.27368.1.A1_at11/111+1777892..1779183expressed protein
LOC_Os01g04100Os.45428.1.S1_at1/111+1777892..1779183expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006465biological_processsignal peptide processing
GO:0009003molecular_functionsignal peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16822.1.S1_at--868--5951Chr01:1753937..1753961 (25 bp)
GAGCAAGTATCCTCTGATTGACCAG
LOC_Os01g04030
Os.16822.1.S1_at--549--1551Chr01:1754083..1754107 (25 bp)
AGCTTGTTCTACACTGGCATGTCAT
LOC_Os01g04030
Os.16822.1.S1_at--983--751Chr01:1754101..1754125 (25 bp)
ATGTCATGCCCAAGGCCGGTGTAAT
LOC_Os01g04030
Os.16822.1.S1_at--827--6371Chr01:1754126..1754150 (25 bp)
GATCCGGGATCGAATGGCTCTCTCA
LOC_Os01g04030
Os.16822.1.S1_at--685--9251Chr01:1754169..1754193 (25 bp)
TCCTATACATCTTGAGCAGCTCTGC
LOC_Os01g04030
Os.16822.1.S1_at--65--6451Chr01:1754201..1754225 (25 bp)
GATCAGTTCTGTAGTAGACTCACAC
LOC_Os01g04030
Os.16822.1.S1_at--996--10831Chr01:1754303..1754327 (25 bp)
TTGGCATCTGCCATACGTTAGGATA
LOC_Os01g04030
Os.16822.1.S1_at--458--5531Chr01:1754364..1754388 (25 bp)
GAAACAGCGGCTGCGTTTATTCTTG
LOC_Os01g04030
Os.16822.1.S1_at--611--10211Chr01:1754381..1754405 (25 bp)
TATTCTTGCCCCAGCTCGATTGAGC
LOC_Os01g04030
Os.16822.1.S1_at--237--2111Chr01:1754421..1754445 (25 bp)
ACATGTGCTGGCAGAGTGACTGTCA
LOC_Os01g04030
Os.16822.1.S1_at--827--431NONE
ATCTTCACTCACTGCGTGGTACATA
NONE
Target Sequence 
GAGCAAGTATCCTCTGATTGACCAGGGAAGCAGTTTGCGCGGGAAGAAAGTTCAGCTTGTTCTACACTGGCATGTCATGC
CCAAGGCCGGTGTAATGATCCGGGATCGAATGGCTCTCTCAGAGTTCAACCTGCCAGACTCCTATACATCTTGAGCAGCT
CTGCTCTATCTGATCAGTTCTGTAGTAGACTCACACATGTAGATCTGGTAACAATCCTCTAATGAACATGACGATNAAGC
ANTTGTGCATCCTAGGCAAAATGAATAGGAGCTGGGGCAAAATGAAAGCATTTGGCATCTGCCATACGTTAGGATAATTG
ATGGAAAACCGAAGCAGCATATGAAAAGCACAGAAACAGCGGCTGCGTTTATTCTTGCCCCAGCTCGATTGAGCACATAG
AGATGCATTACATGTGCTGGCAGAGTGACTGTCAGTGAAGTACTGACATCAACCAGCTACATCTTCACTCACTGCGTGGT
ACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis