Browse Element(s) Details


Os.16825.1.S1_at

Description gb:AK063732.1
DB_XREF= gi:32973750
TID=Os.16825.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-E09, full insert sequence.
FL= gb:AK063732.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1066011/1140S ribosomal protein S2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10610NANA7+5765881..5766816expressed protein
LOC_Os07g10620Os.55266.1.S1_at11/117+5767849..5769747expressed protein
LOC_Os07g10620OsAffx.5285.1.S1_at11/117+5767849..5769747expressed protein
LOC_Os07g10620OsAffx.5285.1.S1_x_at11/117+5767849..5769747expressed protein
LOC_Os07g10630Os.47755.1.S1_at11/117+5772256..5775785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g10630Os.27728.1.S1_at1/117+5772256..5775785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g10640OsAffx.28389.1.S1_at11/117+5778285..5779098expressed protein
LOC_Os07g10650OsAffx.5286.1.S1_at11/117+5784632..5784928hypothetical protein
LOC_Os07g10660Os.16825.1.S1_at11/117+5785515..578752340S ribosomal protein S2, putative, expressed
LOC_Os07g10660OsAffx.5287.1.S1_s_at11/117+5785515..578752340S ribosomal protein S2, putative, expressed
LOC_Os07g10670OsAffx.16198.1.S1_at11/117+5793684..5794307hypothetical protein
LOC_Os07g10680OsAffx.28391.1.S1_x_at2/117+5799164..5800891Polygalacturonase precursor, putative
LOC_Os07g10680OsAffx.28393.1.S1_at2/117+5799164..5800891Polygalacturonase precursor, putative
LOC_Os07g10690Os.27504.1.S1_at11/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10690Os.49888.1.S1_at10/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10690OsAffx.28390.1.S1_at10/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10690Os.32108.1.S1_s_at1/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10700OsAffx.28391.1.S1_at11/117+5810497..5812217Polygalacturonase precursor, putative
LOC_Os07g10700OsAffx.28391.1.S1_x_at11/117+5810497..5812217Polygalacturonase precursor, putative
LOC_Os07g10700Os.49983.1.S1_at1/117+5810497..5812217Polygalacturonase precursor, putative
LOC_Os07g10700OsAffx.3028.1.S1_at1/117+5810497..5812217Polygalacturonase precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005622cellular_componentintracellular
GO:0005840cellular_componentribosome
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16825.1.S1_at--880--1431Chr07:5787201..5787225 (25 bp)
AGAACTGCTGTCTTATCCTCAACCT
LOC_Os07g10660
Os.16825.1.S1_at--16--571Chr07:5787215..5787239 (25 bp)
ATCCTCAACCTCAACTTATGTCTTA
LOC_Os07g10660
Os.16825.1.S1_at--859--4571Chr07:5787261..5787285 (25 bp)
GCGAACCTTAATTTATGTGCTCTGG
LOC_Os07g10660
Os.16825.1.S1_at--105--5291Chr07:5787285..5787309 (25 bp)
GAATGTTTAGGTTTCTCTTCACCGT
LOC_Os07g10660
Os.16825.1.S1_at--562--3751Chr07:5787299..5787323 (25 bp)
CTCTTCACCGTGTTTACAATTCTCA
LOC_Os07g10660
Os.16825.1.S1_at--668--671Chr07:5787331..5787355 (25 bp)
ATGAACGCGTACAGCATTGGTGCAT
LOC_Os07g10660
Os.16825.1.S1_at--706--7751Chr07:5787349..5787373 (25 bp)
GGTGCATTTTGCGAGTTTTACTCTC
LOC_Os07g10660
Os.16825.1.S1_at--334--6811Chr07:5787363..5787387 (25 bp)
GTTTTACTCTCTGTTATGCTGAATT
LOC_Os07g10660
Os.16825.1.S1_at--630--4751Chr07:5787380..5787404 (25 bp)
GCTGAATTGTGTTACCAATCCTCAT
LOC_Os07g10660
Os.16825.1.S1_at--801--1691Chr07:5787393..5787417 (25 bp)
ACCAATCCTCATTGAAGGCCGTTAG
LOC_Os07g10660
Os.16825.1.S1_at--416--6871Chr07:5787492..5787516 (25 bp)
GTATTAATCTGCATCGTTGTAACTT
LOC_Os07g10660
Target Sequence 
AGAACTGCTGTCTTATCCTCAACCTCAACTTATGTCTTAAAAANNCNAAATTTTGAATTAGCGAACCTTAATTTATGTGC
TCTGGAATGTTTAGGTTTCTCTTCACCGTGTTTACAATTCTCATATCCATATGAACGCGTACAGCATTGGTGCATTTTGC
GAGTTTTACTCTCTGTTATGCTGAATTGTGTTACCAATCCTCATTGAAGGCCGTTAGAACAAATTATTATTCTGGTTGTA
TATCANTTACAATCTGAAAATGTTGAGCAGCCTATNCGGGAATATTTATAAAGTATTAATCTGCATCGTTGTAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis