Browse Element(s) Details

Os.16862.1.S1_s_at

Description

gb:AK073730.1
DB_XREF= gi:32983753
TID=Os.16862.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16862 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033058F24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033058F24, full insert sequence.
FL= gb:AK073730.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g02610	11/11	Glycosyl hydrolases family 16 protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g02540	Os.2361.1.S1_at	11/11	3	+	913389..917540	COP9 signalosome complex subunit 1, putative, expressed
LOC_Os03g02550	Os.20482.1.S1_at	11/11	3	+	921081..923409	F-box family protein, putative, expressed
LOC_Os03g02560	Os.16712.1.S1_at	11/11	3	+	924377..927368	F-box family protein, putative, expressed
LOC_Os03g02570	OsAffx.3115.1.S1_x_at	5/11	3	+	928618..930947	Dihydrodipicolinate reductase, N-terminus family protein
LOC_Os03g02580	Os.4871.1.S1_at	2/11	3	+	934216..935823	Armadillo/beta-catenin-like repeat family protein
LOC_Os03g02590	Os.6448.1.S1_at	11/11	3	+	936381..938446	Peroxisomal membrane protein PEX11-1, putative, expressed
LOC_Os03g02600	Os.52984.1.S1_at	10/11	3	+	938790..940869	riboflavin biosynthesis protein RibD containing protein, expressed
LOC_Os03g02610	Os.16862.1.S1_at	11/11	3	+	942525..943662	Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g02610	Os.16862.1.S1_s_at	11/11	3	+	942525..943662	Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g02620	NA	NA	3	+	944590..944937	hypothetical protein
LOC_Os03g02630	Os.40360.1.S1_at	6/11	3	+	946568..949140	hypothetical protein
LOC_Os03g02630	Os.40360.1.S1_x_at	4/11	3	+	946568..949140	hypothetical protein
LOC_Os03g02630	Os.40855.5.S1_x_at	3/11	3	+	946568..949140	hypothetical protein
LOC_Os03g02640	Os.52411.1.S1_at	11/11	3	+	952949..956757	expressed protein
LOC_Os03g02650	Os.55877.1.S1_at	11/11	3	+	957161..958115	AP2 domain containing protein, expressed
LOC_Os03g02660	Os.53330.1.S1_at	11/11	3	+	964116..968105	expressed protein
LOC_Os03g02660	OsAffx.12144.2.A1_s_at	11/11	3	+	964116..968105	expressed protein
LOC_Os03g02660	OsAffx.26471.1.A1_at	1/11	3	+	964116..968105	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0010087	biological_process	vascular tissue development (sensu Tracheophyta)
GO:0042546	biological_process	cell wall biosynthesis
GO:0016762	molecular_function	xyloglucan:xyloglucosyl transferase activity
GO:0016798	molecular_function	hydrolase activity, acting on glycosyl bonds

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.16862.1.S1_s_at--186--587	1	Chr03:943088..943112 (25 bp)	GAGCCGTGGCCGGAGAAACCCATGT	LOC_Os03g02610
Os.16862.1.S1_s_at--296--845	1	Chr03:943094..943118 (25 bp)	TGGCCGGAGAAACCCATGTTCCTGT	LOC_Os03g02610
Os.16862.1.S1_s_at--199--669	1	Chr03:943111..943135 (25 bp)	GTTCCTGTACGCGTCCGTGTGGGAC	LOC_Os03g02610
Os.16862.1.S1_s_at--1040--443	1	Chr03:943189..943213 (25 bp)	GCCATACGTCTGCAGCTACAGGGAT	LOC_Os03g02610
Os.16862.1.S1_s_at--628--987	1	Chr03:943205..943229 (25 bp)	TACAGGGATATCAGGGTGCCCCTTG	LOC_Os03g02610
Os.16862.1.S1_s_at--309--729	1	Chr03:943220..943244 (25 bp)	GTGCCCCTTGCGCTCTCGTTGGAAG	LOC_Os03g02610
Os.16862.1.S1_s_at--733--619	1	Chr03:943247..943271 (25 bp)	GAGGAAGATCCATACAAGTGTGCAT	LOC_Os03g02610
Os.16862.1.S1_s_at--258--637	1	Chr03:943253..943277 (25 bp)	GATCCATACAAGTGTGCATGTGTAG	LOC_Os03g02610
Os.16862.1.S1_s_at--419--79	1	Chr03:943270..943294 (25 bp)	ATGTGTAGGAGATGCGTCTGCTGCC	LOC_Os03g02610
Os.16862.1.S1_s_at--930--855	1	Chr03:943323..943347 (25 bp)	TGGATGCTGGAGATGCGCCTGCTGC	LOC_Os03g02610
Os.16862.1.S1_s_at--525--855	1	Chr03:943431..943455 (25 bp)	TGGATGCCGGAGATGTGCCTGCTTC	LOC_Os03g02610

Target Sequence

GAGCCGTGGCCGGAGAAACCCATGTTCCTGTACGCGTCCGTGTGGGACGCCAGCNACATCAACGACGGGAAGTGGACCGG
NACCTACCACGGCCGCGACGCGCCATACGTCTGCAGCTACAGGGATATCAGGGTGCCCCTTGCGCTCTCGTTGGAAGACG
AGGAAGATCCATACAAGTGTGCATGTGTAGGAGATGCGTCTGCTGCCATCGCCGCCGCCGATGCTGCGGAACAGGTGGAT
GCTGGAGATGCGCCTGCTGCCGCCGCCGCCGCTGATGCTGCGGAAGAGGTGGATGCCGGGGATGCGCCTGCTGCCACCGC
GGCCGCCGATGTTGCGGAACAGGTGGATGCCGGAGATGTGCCTGCTTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis