Browse Element(s) Details


Os.16712.1.S1_at

Description gb:AK066955.1
DB_XREF= gi:32976973
TID=Os.16712.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16712 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-042-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091C10, full insert sequence.
FL= gb:AK066955.1 gb:AK104839.1 gb:AK068678.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0256011/11F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02500NANA3+895794..899947retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g02514OsAffx.3113.1.S1_s_at11/113+901040..906534hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g02514Os.5557.1.S1_at10/113+901040..906534hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g02530Os.22610.1.S1_at11/113+910586..913120membrane protein, putative, expressed
LOC_Os03g02530Os.48102.1.A1_s_at11/113+910586..913120membrane protein, putative, expressed
LOC_Os03g02540Os.2361.1.S1_at11/113+913389..917540COP9 signalosome complex subunit 1, putative, expressed
LOC_Os03g02550Os.20482.1.S1_at11/113+921081..923409F-box family protein, putative, expressed
LOC_Os03g02560Os.16712.1.S1_at11/113+924377..927368F-box family protein, putative, expressed
LOC_Os03g02570OsAffx.3115.1.S1_x_at5/113+928618..930947Dihydrodipicolinate reductase, N-terminus family protein
LOC_Os03g02580Os.4871.1.S1_at2/113+934216..935823Armadillo/beta-catenin-like repeat family protein
LOC_Os03g02590Os.6448.1.S1_at11/113+936381..938446Peroxisomal membrane protein PEX11-1, putative, expressed
LOC_Os03g02600Os.52984.1.S1_at10/113+938790..940869riboflavin biosynthesis protein RibD containing protein, expressed
LOC_Os03g02610Os.16862.1.S1_at11/113+942525..943662Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g02610Os.16862.1.S1_s_at11/113+942525..943662Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g02620NANA3+944590..944937hypothetical protein
LOC_Os03g02630Os.40360.1.S1_at6/113+946568..949140hypothetical protein
LOC_Os03g02630Os.40360.1.S1_x_at4/113+946568..949140hypothetical protein
LOC_Os03g02630Os.40855.5.S1_x_at3/113+946568..949140hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16712.1.S1_at--504--751Chr03:926841..926863 (23 bp)
ATGTATCTGCCATGCTCAAGTGAGA
LOC_Os03g02560
Os.16712.1.S1_at--813--8891Chr03:926859..926883 (25 bp)
TGAGAGGGCGTTCACTTTCTCCAGT
LOC_Os03g02560
Os.16712.1.S1_at--243--9631Chr03:926886..926910 (25 bp)
TCATGGTTGATACCTCTGATCCTGC
LOC_Os03g02560
Os.16712.1.S1_at--35--571Chr03:926904..926928 (25 bp)
ATCCTGCTGGTTATTCAGTCCTCAA
LOC_Os03g02560
Os.16712.1.S1_at--1142--1131Chr03:926920..926944 (25 bp)
AGTCCTCAAGTACTTGCCGGATGCA
LOC_Os03g02560
Os.16712.1.S1_at--1096--6311Chr03:926939..926963 (25 bp)
GATGCAAAAATCCTACGCTCCGAGG
LOC_Os03g02560
Os.16712.1.S1_at--599--1651Chr03:926984..927008 (25 bp)
AGCGAATCGCTGGAGTGGCACTCAC
LOC_Os03g02560
Os.16712.1.S1_at--648--7531Chr03:926998..927022 (25 bp)
GTGGCACTCACTTGTTGCTAGGTAC
LOC_Os03g02560
Os.16712.1.S1_at--882--931Chr03:927141..927165 (25 bp)
AGGACGACCCTTTTGTGTAGGCTTG
LOC_Os03g02560
Os.16712.1.S1_at--1078--10771Chr03:927291..927315 (25 bp)
TTGTTACTGCGCTCAATCTTGATCA
LOC_Os03g02560
Os.16712.1.S1_at--399--10411Chr03:927344..927368 (25 bp)
TTATTGCTGGGCTCATTCCGAGAAC
LOC_Os03g02560
Target Sequence 
ATGTATCTGCCATGCTCAAGTGAGAGGGCGTTCACTTTCTCCAGTTTTCATGGTTGATACCTCTGATCCTGCTGGTTATT
CAGTCCTCAAGTACTTGCCGGATGCAAAAATCCTACGCTCCGAGGACGCAATGCTGGACGATGGCAGCGAATCGCTGGAG
TGGCACTCACTTGTTGCTAGGTACAGGCGGATGAGGCATCTNGCGATAATGAATGTGCTTCTTGGACCTGAAGAGTTCAT
GGATGAAGATGATATTATAGGTGGCGTGTTAATGGATGAAGATGATTTAGGTGGTATGTTAGAGGACGACCCTTTTGTGT
AGGCTTGCTGCTACAGANCCACCCGGGTTTTAAACTCTCTGTAGTTAGTTTTCCTTGCAGNCATCTGTGAAACATTCTGC
AACTTCGTCNAGAAAATACAGTTGTTCTGATCTGGAGAGAAGAACAAATGGATTGTTACTGCGCTCAATCTTGATCATGT
TNATATGCTCTGCTTTGTTGTTTATTTATTGCTGGGCTCATTCCGAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis