Browse Element(s) Details


Os.48102.1.A1_s_at

Description gb:BX900265
DB_XREF= gi:40492425
DB_XREF=BX900265
CLONE=y641f11p3
TID=Os.48102.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48102 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T48496 (A.thaliana) T48496 membrane protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0253011/11membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02480OsAffx.24943.1.S1_at11/113+884501..88804260Kd inner membrane protein, expressed
LOC_Os03g02500NANA3+895794..899947retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g02514OsAffx.3113.1.S1_s_at11/113+901040..906534hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g02514Os.5557.1.S1_at10/113+901040..906534hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g02530Os.22610.1.S1_at11/113+910586..913120membrane protein, putative, expressed
LOC_Os03g02530Os.48102.1.A1_s_at11/113+910586..913120membrane protein, putative, expressed
LOC_Os03g02540Os.2361.1.S1_at11/113+913389..917540COP9 signalosome complex subunit 1, putative, expressed
LOC_Os03g02550Os.20482.1.S1_at11/113+921081..923409F-box family protein, putative, expressed
LOC_Os03g02560Os.16712.1.S1_at11/113+924377..927368F-box family protein, putative, expressed
LOC_Os03g02570OsAffx.3115.1.S1_x_at5/113+928618..930947Dihydrodipicolinate reductase, N-terminus family protein
LOC_Os03g02580Os.4871.1.S1_at2/113+934216..935823Armadillo/beta-catenin-like repeat family protein
LOC_Os03g02590Os.6448.1.S1_at11/113+936381..938446Peroxisomal membrane protein PEX11-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48102.1.A1_s_at--663--7191Chr03:912721..912741 (21 bp)
GTCGGATTCGCGGTTGGTATGACCA
LOC_Os03g02530
Os.48102.1.A1_s_at--1134--10611Chr03:912723..912747 (25 bp)
TTCGCGGTTGGTATGACCATGCTCT
LOC_Os03g02530
Os.48102.1.A1_s_at--540--8591Chr03:912731..912755 (25 bp)
TGGTATGACCATGCTCTTCCGCGGG
LOC_Os03g02530
Os.48102.1.A1_s_at--887--7431Chr03:912799..912823 (25 bp)
GTGTACCAACCTCCAGATGGACCTG
LOC_Os03g02530
Os.48102.1.A1_s_at--193--6251Chr03:912814..912838 (25 bp)
GATGGACCTGCTCGAACTGAGAAAT
LOC_Os03g02530
Os.48102.1.A1_s_at--470--1871Chr03:912829..912853 (25 bp)
ACTGAGAAATACAAGGAGGCCATGA
LOC_Os03g02530
Os.48102.1.A1_s_at--359--4651Chr03:912884..912908 (25 bp)
GCGTAATCCTGTATGATGCTGCAAA
LOC_Os03g02530
Os.48102.1.A1_s_at--294--6351Chr03:912898..912922 (25 bp)
GATGCTGCAAACACATATTCTGTTT
LOC_Os03g02530
Os.48102.1.A1_s_at--1009--511Chr03:912953..912977 (25 bp)
ATCGATCGATCTCATACTGTAGGCA
LOC_Os03g02530
Os.48102.1.A1_s_at--977--451Chr03:912961..912985 (25 bp)
ATCTCATACTGTAGGCAGGCTCGTC
LOC_Os03g02530
Os.48102.1.A1_s_at--535--6571Chr03:913020..913044 (25 bp)
GATTCATTCTTTGTATTGCAATTAT
LOC_Os03g02530
Target Sequence 
GTCGGATTCGCGGTTGGTATGACCATGCTCTTCCGCGGGGAGNACGCCNNCGACAGCTGCCACTGGTGTCACTACCTCAG
CNGTGTACCAACCTCCAGATGGACCTGCTCGAACTGAGAAATACAAGGAGGCCATGAACAGATTTTCTCTGTACTTTTNT
TCTNNNNTGCGTAATCCTGTATGATGCTGCAAACACATATTCTGTTTATCNGTAGATAGATTAAAGAAGGATTCTTGATC
GATCGATCTCATACTGTAGGCAGGCTCGTCGGGNNCTTCCACTCTTCCTATCTCNTGTACAATTGATTCATTCTTTGTAT
TGCAATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48102.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis