Browse Element(s) Details


OsAffx.3113.1.S1_s_at

Description tigr:9631.m00161
TID=OsAffx.3113.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hydrolase, alphabeta fold family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0251411/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02480OsAffx.24943.1.S1_at11/113+884501..88804260Kd inner membrane protein, expressed
LOC_Os03g02500NANA3+895794..899947retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g02514OsAffx.3113.1.S1_s_at11/113+901040..906534hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g02514Os.5557.1.S1_at10/113+901040..906534hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g02530Os.22610.1.S1_at11/113+910586..913120membrane protein, putative, expressed
LOC_Os03g02530Os.48102.1.A1_s_at11/113+910586..913120membrane protein, putative, expressed
LOC_Os03g02540Os.2361.1.S1_at11/113+913389..917540COP9 signalosome complex subunit 1, putative, expressed
LOC_Os03g02550Os.20482.1.S1_at11/113+921081..923409F-box family protein, putative, expressed
LOC_Os03g02560Os.16712.1.S1_at11/113+924377..927368F-box family protein, putative, expressed
LOC_Os03g02570OsAffx.3115.1.S1_x_at5/113+928618..930947Dihydrodipicolinate reductase, N-terminus family protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3113.1.S1_s_at--661--9311Chr03:905425..905449 (25 bp)
TCCCTCGGCTGCCATGCTGTTTGGG
LOC_Os03g02514
OsAffx.3113.1.S1_s_at--547--4531Chr03:905452..905475 (24 bp)
GCCCTCAAGTACATCCCAGAAAGGA
LOC_Os03g02514
OsAffx.3113.1.S1_s_at--748--9291Chr03:905797..905821 (25 bp)
TCCCCAACAAGCGTGATGCCGAGAT
LOC_Os03g02514
OsAffx.3113.1.S1_s_at--212--4671Chr03:905807..905831 (25 bp)
GCGTGATGCCGAGATCCGCAAAAAT
LOC_Os03g02514
OsAffx.3113.1.S1_s_at--41--2951Chr03:905835..905858 (24 bp)
AAGGCGGATGGCTCGTTCCAGAAGA
LOC_Os03g02514
OsAffx.3113.1.S1_s_at--125--2751Chr03:905974..905997 (24 bp)
AAGAAAATGGACTTGGCGACACAAC
LOC_Os03g02514
OsAffx.3113.1.S1_s_at--568--8471Chr03:905986..906010 (25 bp)
TGGCGACACAACAAGGCATTCATGA
LOC_Os03g02514
OsAffx.3113.1.S1_s_at--453--4951Chr03:906001..906025 (25 bp)
GCATTCATGAGTCGTACTACCGTGA
LOC_Os03g02514
OsAffx.3113.1.S1_s_at--74--391Chr03:906036..906060 (25 bp)
ATGTTCGGCAAGTGGGAGTTTGACC
LOC_Os03g02514
OsAffx.3113.1.S1_s_at--959--6071Chr03:906051..906075 (25 bp)
GAGTTTGACCCGATGAGCTTGCCGA
LOC_Os03g02514
OsAffx.3113.1.S1_s_at--638--3891Chr03:906088..906112 (25 bp)
CTGTGCATATCTGGCAGGGCGACGA
LOC_Os03g02514
Target Sequence 
TCCCTCGGCTGCCATGCTGTTTGGGGCGCCCTCAAGTACATCCCAGAAAGGATTGCTGGAGCGGCCATGATGGCACCGGT
GGTGAACTACTGGTGGCCGGGGTTCCCTACCGATCTGGCTGCCGAGGTGTACAACAAGCAGGAAGTGGGTGACCAGTGGG
CGCTGCGTGTTTCACACCATGCACCCAGCATCCTCCACTGGTGGATGGAGCAGAGCTGGCTTCCCACCTCCACCGTCGTG
GCTGGCACCACTCCCCTCCCCAACAAGCGTGATGCCGAGATCCGCAAAAATATGAAGGCGGATGGCTCGTTCCAGAAGAA
AATGGACTTGGCGACACAACAAGGCATTCATGAGTCGTACTACCGTGACATGATGGTGATGTTCGGCAAGTGGGAGTTTG
ACCCGATGAGCTTGCCGAAGCCGCCATGCCCTGTGCATATCTGGCAGGGCGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3113.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis