Browse Element(s) Details

Os.2361.1.S1_at

Description

gb:AF106844.1
DB_XREF= gi:10443484
GEN=rCOP11
TID=Os.2361.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2361 (NCBI UniGene Cluster)
DEF=Oryza sativa rCOP11 protein (rCOP11) mRNA, complete cds.
PROD=rCOP11 protein
FL= gb:AF106844.1 gb:AK101870.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g02540	11/11	COP9 signalosome complex subunit 1, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g02500	NA	NA	3	+	895794..899947	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g02514	OsAffx.3113.1.S1_s_at	11/11	3	+	901040..906534	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g02514	Os.5557.1.S1_at	10/11	3	+	901040..906534	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g02530	Os.22610.1.S1_at	11/11	3	+	910586..913120	membrane protein, putative, expressed
LOC_Os03g02530	Os.48102.1.A1_s_at	11/11	3	+	910586..913120	membrane protein, putative, expressed
LOC_Os03g02540	Os.2361.1.S1_at	11/11	3	+	913389..917540	COP9 signalosome complex subunit 1, putative, expressed
LOC_Os03g02550	Os.20482.1.S1_at	11/11	3	+	921081..923409	F-box family protein, putative, expressed
LOC_Os03g02560	Os.16712.1.S1_at	11/11	3	+	924377..927368	F-box family protein, putative, expressed
LOC_Os03g02570	OsAffx.3115.1.S1_x_at	5/11	3	+	928618..930947	Dihydrodipicolinate reductase, N-terminus family protein
LOC_Os03g02580	Os.4871.1.S1_at	2/11	3	+	934216..935823	Armadillo/beta-catenin-like repeat family protein
LOC_Os03g02590	Os.6448.1.S1_at	11/11	3	+	936381..938446	Peroxisomal membrane protein PEX11-1, putative, expressed
LOC_Os03g02600	Os.52984.1.S1_at	10/11	3	+	938790..940869	riboflavin biosynthesis protein RibD containing protein, expressed
LOC_Os03g02610	Os.16862.1.S1_at	11/11	3	+	942525..943662	Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g02610	Os.16862.1.S1_s_at	11/11	3	+	942525..943662	Glycosyl hydrolases family 16 protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0000338	biological_process	protein deneddylation
GO:0006461	biological_process	protein complex assembly
GO:0006511	biological_process	ubiquitin-dependent protein catabolism
GO:0009640	biological_process	photomorphogenesis
GO:0009793	biological_process	embryonic development (sensu Magnoliophyta)
GO:0030163	biological_process	protein catabolism
GO:0005634	cellular_component	nucleus
GO:0008180	cellular_component	signalosome complex
GO:0008541	cellular_component	proteasome regulatory particle, lid subcomplex (sensu Eukaryota)

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.2361.1.S1_at--23--69	1	Chr03:914097..914121 (25 bp)	ATGACGTCCGTGTCCATGTTGGAGA	LOC_Os03g02540
Os.2361.1.S1_at--407--557	1	Chr03:914074..914098 (25 bp)	GAAAGAGCTAGCTGCACTGATCACT	LOC_Os03g02540
Os.2361.1.S1_at--724--309	1	Chr03:913966..913986 (21 bp)	AATACAGGCTCGGATAGACTCCCAC	LOC_Os03g02540
Os.2361.1.S1_at--506--1043	1	Chr03:913930..913954 (25 bp)	TTATGCGAGGCATGCTGACCAAAGA	LOC_Os03g02540
Os.2361.1.S1_at--820--283	1	Chr03:913851..913875 (25 bp)	AAGTCTTTGCTTCTGAGAGCTAACC	LOC_Os03g02540
Os.2361.1.S1_at--209--601	1	Chr03:913837..913861 (25 bp)	GAGAGCTAACCTCATCAAACATGAT	LOC_Os03g02540
Os.2361.1.S1_at--1074--279	1	Chr03:913788..913812 (25 bp)	AAGATGTGAACTCTGCCACTGCTGT	LOC_Os03g02540
Os.2361.1.S1_at--631--665	1	Chr03:913765..913789 (25 bp)	GTTGCTGAAACAAGGCGTGCCGGCT	LOC_Os03g02540
Os.2361.1.S1_at--209--919	1	Chr03:913748..913772 (25 bp)	TGCCGGCTTATCCTTTTGGACACAT	LOC_Os03g02540
Os.2361.1.S1_at--863--317	1	Chr03:913612..913636 (25 bp)	CAATTCCTTGCTTGCTGTGGTTTTA	LOC_Os03g02540
Os.2361.1.S1_at--654--545	1	Chr03:913534..913558 (25 bp)	GAACGATCTGTCACATTTGAGGCCA	LOC_Os03g02540

Target Sequence

ATGACGTCCGTGTCCATGTTGGAGAAAGAGCTAGCTGCACTGATCACTGAGAACAAAATACAGGCTCGGATAGACTCCCA
CAACNAAGATTCTTTATGCGAGGCATGCTGACCAAAGAAATGCAACTTTTCAACGTGTNCTTCAAACAGGCAATGAGTTT
GAGAGAGATGTTAAGTCTTTGCTTCTGAGAGCTAACCTCATCAAACATGATTTCAACCANAAGAGCTGGACAAAGGAAGA
TGTGAACTCTGCCACTGCTGTTGCTGAAACAAGGCGTGCCGGCTTATCCTTTTGGACACATTTGTTTTGTNCCTAAAAGT
GTATGGGCCATGGAGAAGTTTTGGTGATGAATCATGAATTAGACTGATGACTGAGCATGCAAGTCTGTTTAAATGCGTTT
TACCTTTTCGGACAATTCCTTGCTTGCTGTGGTTTTAAATATGATGCTGTGTAAACAGCTCTGGATATTTAAGCATCTAG
AGACTTGACAGAACGATCTGTCACATTTGAGGCCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis