Browse Element(s) Details


Os.22610.1.S1_at

Description gb:AK061443.1
DB_XREF= gi:32971461
TID=Os.22610.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22610 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033105L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-307-C10, full insert sequence.
FL= gb:AK102725.1 gb:AK061443.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0253011/11membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02480OsAffx.24943.1.S1_at11/113+884501..88804260Kd inner membrane protein, expressed
LOC_Os03g02500NANA3+895794..899947retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g02514OsAffx.3113.1.S1_s_at11/113+901040..906534hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g02514Os.5557.1.S1_at10/113+901040..906534hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g02530Os.22610.1.S1_at11/113+910586..913120membrane protein, putative, expressed
LOC_Os03g02530Os.48102.1.A1_s_at11/113+910586..913120membrane protein, putative, expressed
LOC_Os03g02540Os.2361.1.S1_at11/113+913389..917540COP9 signalosome complex subunit 1, putative, expressed
LOC_Os03g02550Os.20482.1.S1_at11/113+921081..923409F-box family protein, putative, expressed
LOC_Os03g02560Os.16712.1.S1_at11/113+924377..927368F-box family protein, putative, expressed
LOC_Os03g02570OsAffx.3115.1.S1_x_at5/113+928618..930947Dihydrodipicolinate reductase, N-terminus family protein
LOC_Os03g02580Os.4871.1.S1_at2/113+934216..935823Armadillo/beta-catenin-like repeat family protein
LOC_Os03g02590Os.6448.1.S1_at11/113+936381..938446Peroxisomal membrane protein PEX11-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22610.1.S1_at--1149--4951Chr03:911910..911934 (25 bp)
GCATCCTCCCACACGTGAATAACTT
LOC_Os03g02530
Os.22610.1.S1_at--133--3071Chr03:911927..911951 (25 bp)
AATAACTTCGCGCACATCGGCGGGT
LOC_Os03g02530
Os.22610.1.S1_at--700--6571Chr03:911950..911974 (25 bp)
GTTCCTGACGGGTTTCCTGCTCGGA
LOC_Os03g02530
Os.22610.1.S1_at--136--4291Chr03:911965..911989 (25 bp)
CCTGCTCGGATTCGTGCTGCTGATG
LOC_Os03g02530
Os.22610.1.S1_at--49--8871Chr03:911985..912009 (25 bp)
TGATGCGGCCGCATTTCGGCTGGAT
LOC_Os03g02530
Os.22610.1.S1_at--973--191Chr03:911997..912021 (25 bp)
ATTTCGGCTGGATGGAGCGCTACAG
LOC_Os03g02530
Os.22610.1.S1_at--136--1451Chr03:912757..912781 (25 bp)
AGAACGCCAACGACAGCTGCCACTG
LOC_Os03g02530
Os.22610.1.S1_at--432--10771Chr03:913044..913068 (25 bp)
TTGAGGCTTGGAATCTCTTCTGTCC
LOC_Os03g02530
Os.22610.1.S1_at--684--5251Chr03:913054..913078 (25 bp)
GAATCTCTTCTGTCCCTGCATCACT
LOC_Os03g02530
Os.22610.1.S1_at--937--3831Chr03:913069..913093 (25 bp)
CTGCATCACTTCTTCCAAATTAAAA
LOC_Os03g02530
Os.22610.1.S1_at--1007--10111Chr03:913096..913120 (25 bp)
TATCTTTGAACCTGTATGGACAAGC
LOC_Os03g02530
Target Sequence 
GCATCCTCCCACACGTGAATAACTTCGCGCACATCGGCGGGTTCCTGACGGGTTTCCTGCTCGGATTCGTGCTGCTGATG
CGGCCGCATTTCGGCTGGATGGAGCGCTACAGCCTCCCCTCCGGCAGCCCGTGCAGCTCCAAGAAGTACCTCGTCTACCA
GTGGATCCTGCTTGCCATCGCCACTGCCCTCGTCATTGTCGGATTCGCGGTTGGTATGACCATGCTCTTCCGCGGGGAGA
ACGCCAACGACAGCTGCCACTGGTGTCACTACCTCAGCTGTGTACCAACCTCCAGATGGACCTGCTCGAACTGAGAAATA
CAAGGAGGCCATGAACAAATTTTCTCTGTACTTTTTTTCTTTTTGCGTAATCCTGTATGATGCTGCAAACACATATTCTG
TTTATCTGTAGATAGATTAAAGAAGGATTCTTGATCGATCGATCTCATACTGTAGGCAGGCTCGTCGGGGTCTTCCACTC
TTCCTATCTCTTGTACAATTGATTCATTCTTTGTATTGCAATTATTGAGGCTTGGAATCTCTTCTGTCCCTGCATCACTT
CTTCCAAATTAAAACATATCTTTGAACCTGTATGGACAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22610.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis