Browse Element(s) Details


Os.16878.1.S1_at

Description gb:AK058258.1
DB_XREF= gi:32968276
TID=Os.16878.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16878 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0075N02.19 (OSJNBa0075N02.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-012-E11, full insert sequence.
FL= gb:AK058258.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2715011/11Trafficking protein particle complex subunit 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27120Os.8069.1.S1_at11/117+15724593..15728423expressed protein
LOC_Os07g27120Os.35374.1.S1_x_at10/117+15724593..15728423expressed protein
LOC_Os07g27130Os.45967.1.A1_at1/117+15728576..15729518hypothetical protein
LOC_Os07g27140Os.46440.1.A1_s_at11/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.27347.1.S1_a_at11/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.27347.3.S1_at10/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.36388.1.S1_at1/117+15731085..15743951AT hook motif family protein
LOC_Os07g27150Os.16878.1.S1_at11/117+15749432..15754093Trafficking protein particle complex subunit 4, putative, expressed
LOC_Os07g27150OsAffx.8670.1.S1_at4/117+15749432..15754093Trafficking protein particle complex subunit 4, putative, expressed
LOC_Os07g27159NANA7+15754852..15755082NA
LOC_Os07g27170NANA7+15757867..15764117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27180Os.44098.1.S1_at11/117+15767049..15785663TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16878.1.S1_at--304--2632Chr07:15753859..15753883 (25 bp)
AACCTGGCTCAGGTCATTCAGAAGG
LOC_Os07g27150
Os.16878.1.S1_at--973--7132Chr07:15753871..15753895 (25 bp)
GTCATTCAGAAGGACCGCGTCACAC
LOC_Os07g27150
Os.16878.1.S1_at--1141--4632Chr07:15753887..15753911 (25 bp)
GCGTCACACTTCTGGGTCGATGAAT
LOC_Os07g27150
Os.16878.1.S1_at--361--5531Chr07:15753918..15753942 (25 bp)
GAAAACATGACGCACCATGTCTTTG
LOC_Os07g27150
Os.16878.1.S1_at--603--4091Chr07:15753928..15753952 (25 bp)
CGCACCATGTCTTTGTATGTGGCTT
LOC_Os07g27150
Os.16878.1.S1_at--255--8511Chr07:15753983..15754007 (25 bp)
TGGAATTCAGGCAAGTCATTACACT
LOC_Os07g27150
Os.16878.1.S1_at--349--131Chr07:15754000..15754024 (25 bp)
ATTACACTGCATCACAAAGTCCATA
LOC_Os07g27150
Os.16878.1.S1_at--181--2331Chr07:15754015..15754039 (25 bp)
AAAGTCCATATACAGTGTGCAGTCG
LOC_Os07g27150
Os.16878.1.S1_at--249--9871Chr07:15754025..15754049 (25 bp)
TACAGTGTGCAGTCGATTCCTTCTA
LOC_Os07g27150
Os.16878.1.S1_at--350--5031Chr07:15754033..15754057 (25 bp)
GCAGTCGATTCCTTCTAGTTCTGAA
LOC_Os07g27150
Os.16878.1.S1_at--329--91Chr07:15754067..15754091 (25 bp)
ATTCCTGAAGTATCATTTGTGCCAT
LOC_Os07g27150
Target Sequence 
AACCTGGCTCAGGTCATTCAGAAGGACCGCGTCACACTTCTGGGTCGATGAATCATTTAGAAAACATGACGCACCATGTC
TTTGTATGTGGCTTATATGACATGTATGGTGTCAGTAGGGTACTTGGAATTCAGGCAAGTCATTACACTGCATCACAAAG
TCCATATACAGTGTGCAGTCGATTCCTTCTAGTTCTGAAAATTACTTTATTCCTGAAGTATCATTTGTGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis