Browse Element(s) Details


Os.16897.1.S1_at

Description gb:AK066720.1
DB_XREF= gi:32976738
TID=Os.16897.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.16897 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative heat-shock protein (OSJNBb0027B08.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013087E11, full insert sequence.
FL= gb:AK066720.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6154011/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61470OsAffx.22650.2.S1_x_at11/113+34809610..34810288expressed protein
LOC_Os03g61470OsAffx.22650.2.S1_at11/113+34809610..34810288expressed protein
LOC_Os03g61470OsAffx.22650.1.S1_x_at2/113+34809610..34810288expressed protein
LOC_Os03g61480OsAffx.22650.1.S1_x_at11/113+34812844..34813474Protein of unknown function, DUF614 containing protein
LOC_Os03g61480OsAffx.22650.2.S1_x_at1/113+34812844..34813474Protein of unknown function, DUF614 containing protein
LOC_Os03g61490OsAffx.22650.2.S1_x_at2/113+34817300..34817943PGPS/D12, putative, expressed
LOC_Os03g61490OsAffx.22650.1.S1_x_at2/113+34817300..34817943PGPS/D12, putative, expressed
LOC_Os03g61500Os.34496.1.S1_at11/113+34822452..34823512PGP224, putative, expressed
LOC_Os03g61500OsAffx.22650.2.S1_x_at2/113+34822452..34823512PGP224, putative, expressed
LOC_Os03g61500OsAffx.22650.1.S1_x_at2/113+34822452..34823512PGP224, putative, expressed
LOC_Os03g61510Os.38864.1.S1_at8/113+34830157..34830983pectinesterase inhibitor domain containing protein, expressed
LOC_Os03g61530Os.5700.1.S1_at9/113+34834281..34835059pectinesterase inhibitor domain containing protein, expressed
LOC_Os03g61540Os.16897.1.S1_at11/113+34835273..34839862Lipase family protein, expressed
LOC_Os03g61550OsAffx.3666.1.S1_at11/113+34843798..34845023DnaJ domain containing protein, expressed
LOC_Os03g61550Os.54537.1.S1_at1/113+34843798..34845023DnaJ domain containing protein, expressed
LOC_Os03g61560Os.7256.1.S1_at11/113+34845557..34850961expressed protein
LOC_Os03g61570Os.16297.1.S1_a_at11/113+34852338..34853780expressed protein
LOC_Os03g61580Os.26697.2.S1_x_at11/113+34857548..34861623expressed protein
LOC_Os03g61580Os.26697.1.S1_at10/113+34857548..34861623expressed protein
LOC_Os03g61580OsAffx.30311.1.S1_at1/113+34857548..34861623expressed protein
LOC_Os03g61590Os.34488.1.S1_at11/113+34862228..34862751expressed protein
LOC_Os03g61600Os.13812.1.S1_a_at11/113+34862852..34865607Phosphoribosylformylglycinamidine cyclo-ligase,chloroplast/mitochondrial precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16897.1.S1_at--843--2631Chr03:34835844..34835868 (25 bp)
AACCAGCATCAAACGGACCTCGTTG
LOC_Os03g61540
Os.16897.1.S1_at--1041--2571Chr03:34835833..34835857 (25 bp)
AACGGACCTCGTTGCTAATACAGAG
LOC_Os03g61540
Os.16897.1.S1_at--216--1371Chr03:34835812..34835836 (25 bp)
AGAGCAGGACTTTTCAGCTGTATCA
LOC_Os03g61540
Os.16897.1.S1_at--309--1611Chr03:34835797..34835821 (25 bp)
AGCTGTATCAGTTGTTACCTCTGAA
LOC_Os03g61540
Os.16897.1.S1_at--371--5511Chr03:34835658..34835682 (25 bp)
GAACAATCATCCTTGACAGGGCAGG
LOC_Os03g61540
Os.16897.1.S1_at--684--6191Chr03:34835634..34835658 (25 bp)
GAGGAACCAGAATCACTGAAGCAGA
LOC_Os03g61540
Os.16897.1.S1_at--829--4411Chr03:34835558..34835582 (25 bp)
GCCAGTTTTTCCCTCCTGGAAGAAT
LOC_Os03g61540
Os.16897.1.S1_at--162--10411Chr03:34835534..34835558 (25 bp)
TTATTCACATGGTTGCAATGGCCTC
LOC_Os03g61540
Os.16897.1.S1_at--1025--7371Chr03:34835492..34835516 (25 bp)
GTGAGGGATCCAGCAGCAATGAGAT
LOC_Os03g61540
Os.16897.1.S1_at--600--4951Chr03:34835462..34835486 (25 bp)
GCATTTATGAAACGCCAAGAGATTT
LOC_Os03g61540
Os.16897.1.S1_at--1058--351Chr03:34835427..34835451 (25 bp)
ATAAGGCTAGCTCCAAACATGATAA
LOC_Os03g61540
Target Sequence 
AACCAGCATCAAACGGACCTCGTTGCTAATACAGAGCAGGACTTTTCAGCTGTATCAGTTGTTACCTCTGAAGAAAAGAT
TGTACTATCTAGCAACGATAATGTTATCAGTANAAAGTCTGTTGCTGGATCAGGCTTNGCAGCACAAGGGGATGTGAACA
TCAATGGATCACTGGANACTGAACAAGAACAATCATCCTTGACAGGGCAGGAGGAACCAGAATCACTGAAGCAGAACNGT
GATANCAAANACAAGCTGAAAGAACCGCTACCNACCTGCAGTTCGCGCCAGTTTTTCCCTCCTGGAAGAATTATTCACAT
GGTTGCAATGGCCTCNCCTGACCCAAATCCNGGTGAGGGATCCAGCAGCAATGAGATCATTNGCATTTATGAAACGCCAA
GAGATTTGTATGGGAAAATAAGGCTAGCTCCAAACATGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16897.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis