Browse Element(s) Details


Os.16968.1.S1_at

Description gb:AK099900.1
DB_XREF= gi:32985109
TID=Os.16968.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16968 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013114D14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114D14, full insert sequence.
FL= gb:AK099900.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0399010/11'chromo' domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03920Os.5425.1.S1_at9/113+1769942..1774716Ubiquitin family protein, expressed
LOC_Os03g03930Os.24297.1.A1_at11/113+1777041..1782663polyA polymerase family protein, expressed
LOC_Os03g03949Os.15751.1.S1_at11/113+1782819..1791636expressed protein
LOC_Os03g03949Os.45957.4.S1_x_at1/113+1782819..1791636expressed protein
LOC_Os03g03970NANA3+1791816..1792184retrotransposon protein, putative, unclassified
LOC_Os03g03980OsAffx.24957.1.S1_at11/113+1793782..1794833expressed protein
LOC_Os03g03990Os.16968.1.S1_at10/113+1795856..1797181'chromo' domain containing protein, expressed
LOC_Os03g04000Os.18327.1.S1_at11/113+1800611..1804371AMP-binding enzyme family protein, expressed
LOC_Os03g04010OsAffx.24958.1.S1_at11/113+1805566..1805960hypothetical protein
LOC_Os03g04020Os.21349.1.S1_at11/113+1809675..1811413Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os03g04030Os.52180.1.S1_at11/113+1814950..1818869HVA22-like protein i, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009644biological_processresponse to high light intensity
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0045038biological_processprotein import into chloroplast thylakoid membrane
GO:0009507cellular_componentchloroplast
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16968.1.S1_at--31--971Chr03:1796235..1796259 (25 bp)
AGGACCTGGTGAAGGACTTCGACGC
LOC_Os03g03990
Os.16968.1.S1_at--831--2971Chr03:1796145..1796169 (25 bp)
AATGGGAGTACCTTGTCAAGTGGGT
LOC_Os03g03990
Os.16968.1.S1_at--16--1751Chr03:1796136..1796160 (25 bp)
ACCTTGTCAAGTGGGTGGACATCGA
LOC_Os03g03990
Os.16968.1.S1_at--103--7232Chr01:7942558..7942586 (23 bp)
GTCGACGCCGAACTCCTCCAGGAGT
NONE
Os.16968.1.S1_at--734--7691Chr03:1795996..1796020 (25 bp)
GGGTGACAGCGTGTCGCCGTCGACG
LOC_Os03g03990
Os.16968.1.S1_at--881--3991Chr03:1795979..1796003 (25 bp)
CGTCGACGGAGGGTGTTCGATTCTT
LOC_Os03g03990
Os.16968.1.S1_at--874--7731Chr03:1795968..1795992 (25 bp)
GGTGTTCGATTCTTCCTGGTTTTGC
LOC_Os03g03990
Os.16968.1.S1_at--864--3631NONE
CTTCCTGGTTTTGCTGTGTATAACA
NONE
Os.16968.1.S1_at--1159--3971Chr03:1795929..1795953 (25 bp)
CGGGATAAAATGTTTGTGCTGCTGC
LOC_Os03g03990
Os.16968.1.S1_at--22--4771Chr03:1795909..1795933 (25 bp)
GCTGCAAAATGTATCATTAGCGCTT
LOC_Os03g03990
Os.16968.1.S1_at--649--1651Chr03:1795891..1795915 (25 bp)
AGCGCTTTGATAATTTTTGAGTTGA
LOC_Os03g03990
Target Sequence 
AGGACCTGGTGAAGGACTTCGACGCCGGGCTGGAGTACGCCGTCGCGGAGGCCGTCGTCNACANAGAGGGAGGCGGCGGA
AGGGGAGGGGAAATGGGAGTACCTTGTCAAGTGGGTGGACATCGAGGAGGCGACGTGGGAGCCCGCGGAGAACGTCGACG
CCGAACTCCTCCAGGAGTTCGAGCAGCGGCAATCTGGGGTGGCTGCTGGCGGTGATGCTCCGCCGCCGCCGCCGGTCGCC
GGGTGACAGCGTGTCGCCGTCGACGGAGGGTGTTCGATTCTTCCTGGTTTTGCTGTGTATAACAGAACGGGATAAAATGT
TTGTGCTGCTGCAAAATGTATCATTAGCGCTTTGATAATTTTTGAGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis