Browse Element(s) Details


Os.16973.1.S1_at

Description gb:AK101019.1
DB_XREF= gi:32986228
TID=Os.16973.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16973 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149J24, full insert sequence.
FL= gb:AK101019.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3583011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35780NANA2+21497115..21499620transposon protein, putative, Mutator sub-class
LOC_Os02g35790OsAffx.24589.1.S1_at11/112+21501175..21501640hypothetical protein
LOC_Os02g35800NANA2+21502794..21505423retrotransposon protein, putative, unclassified
LOC_Os02g35810OsAffx.24590.1.S1_at11/112+21507163..21507769hypothetical protein
LOC_Os02g35820Os.52284.1.S1_at11/112+21512898..21517682retrotransposon protein, putative, unclassified, expressed
LOC_Os02g35820Os.55663.1.S1_at11/112+21512898..21517682retrotransposon protein, putative, unclassified, expressed
LOC_Os02g35820Os.52284.2.S1_x_at11/112+21512898..21517682retrotransposon protein, putative, unclassified, expressed
LOC_Os02g35830Os.16973.1.S1_at11/112+21520020..21523069expressed protein
LOC_Os02g35840Os.7921.1.S1_at11/112+21523733..21526921expressed protein
LOC_Os02g35849OsAffx.13875.1.S1_at2/112+21530597..21532263NA
LOC_Os02g35860Os.17728.1.S1_at10/112+21537741..21542976expressed protein
LOC_Os02g35870OsAffx.2874.1.S1_at11/112+21544431..21548848Avr9 elicitor response protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16973.1.S1_at--986--5031Chr02:21522389..21522540 (25 bp)
GCAGAGGCAGGCACTTGTGACGTAC
LOC_Os02g35830
Os.16973.1.S1_at--337--8251Chr02:21522398..21522549 (25 bp)
GGCACTTGTGACGTACCTGGAGAAC
LOC_Os02g35830
Os.16973.1.S1_at--506--1771Chr02:21522539..21522563 (25 bp)
ACCTGGAGAACAACCGGGCCGGCAT
LOC_Os02g35830
Os.16973.1.S1_at--235--3931Chr02:21522558..21522582 (25 bp)
CGGCATCACGGTGTACGGCTTCGTC
LOC_Os02g35830
Os.16973.1.S1_at--729--8811Chr02:21522693..21522717 (25 bp)
TGTTGAAGCTTTCAGCTCTCTCTCT
LOC_Os02g35830
Os.16973.1.S1_at--477--4251Chr02:21522727..21522751 (25 bp)
CCGTGCCGAGATTTCTGATGATCAA
LOC_Os02g35830
Os.16973.1.S1_at--1010--6411Chr02:21522753..21522777 (25 bp)
GATCTCTGCATCGTCTCATATTGCT
LOC_Os02g35830
Os.16973.1.S1_at--830--7151Chr02:21522765..21522789 (25 bp)
GTCTCATATTGCTTCCTGGATTGTA
LOC_Os02g35830
Os.16973.1.S1_at--440--1211Chr02:21522829..21522853 (25 bp)
AGTTTCTGTGCCATGTCCGGCACAA
LOC_Os02g35830
Os.16973.1.S1_at--1158--7931Chr02:21522970..21522994 (25 bp)
GGATAGTTGTCCAGCTTGATTTGAT
LOC_Os02g35830
Os.16973.1.S1_at--1118--1871Chr02:21523048..21523069 (22 bp)
ACGATTACAGTGATGTTCAGGTACA
LOC_Os02g35830
Target Sequence 
GCAGAGGCAGGCACTTGTGACGTACCTGGAGAACAACCGGGCCGGCATCACGGTGTACGGCTTCGTCGTCGACCGGACGT
GGCTGCACGCGCTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGAGCTTTTGNCCTCCTGTTGAAGCTTTCAGCTCTCTCTCTGCTCTGCANCCGTGCCGAGATTTCTGATGATCAANGA
TCTCTGCATCGTCTCATATTGCTTCCTGGATTGTACAATACNAAATCGAGTGCAGAAATTGCAGATAATAGNTCAGTTTC
TGTGCCATGTCCGGCACAAAANCGAAGCNACANGTTCTGAAGTTTTTAGCTGTATGTTTTTCTTTAAAANTTTTTATGGT
TCTTTGTTTGAGNNNNNNNNTGATGGAGCATTAGTTGTATGAAAAATAATGGGATGGGATAGTTGTCCAGCTTGATTTGA
TGAGATTATGAGAGAACAGTAATCGTTGTATACTGTATAGGTTGATTTCATGAAACGATTACAGTGATGTTCAGGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16973.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis