Browse Element(s) Details


Os.16987.1.S1_at

Description gb:AK111615.1
DB_XREF= gi:37988278
TID=Os.16987.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16987 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106F11, full insert sequence.
FL= gb:AK111615.1 gb:AK111806.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g477006/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47640OsAffx.26506.1.S1_at11/114+28054429..28056732RWP-RK domain containing protein, expressed
LOC_Os04g47640Os.28979.1.S1_at1/114+28054429..28056732RWP-RK domain containing protein, expressed
LOC_Os04g47650OsAffx.26507.1.S1_x_at11/114+28059403..28059826expressed protein
LOC_Os04g47650OsAffx.11111.1.S1_x_at2/114+28059403..28059826expressed protein
LOC_Os04g47660NANA4+28061744..28063868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47670Os.28549.1.S1_at11/114+28064986..28066112expressed protein
LOC_Os04g47680OsAffx.14317.1.S1_at11/114+28068989..28072842Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os04g47680Os.51609.1.S1_at1/114+28068989..28072842Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os04g47690Os.46886.1.S1_at11/114+28074086..28077034HMG box family protein, expressed
LOC_Os04g47690Os.12612.1.S1_at11/114+28074086..28077034HMG box family protein, expressed
LOC_Os04g47700Os.16987.1.S1_at6/114+28077546..28085930expressed protein
LOC_Os04g47710OsAffx.31069.1.S1_x_at1/114+28090281..28093340hypothetical protein
LOC_Os04g47720Os.49838.1.S1_at11/114+28095969..28097718Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g47730NANA4+28100135..28102625retrotransposon protein, putative, unclassified
LOC_Os04g47740NANA4+28104147..28110070retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16987.1.S1_at--240--2191Chr04:28078245..28078269 (25 bp)
ACACTTCCCAGGTCTAAGCAAACAG
LOC_Os04g47700
Os.16987.1.S1_at--981--5951Chr04:28078067..28078090 (24 bp)
GAGAAAAGTTGAAGCCCAGGACAGA
LOC_Os04g47700
Os.16987.1.S1_at--704--5351Chr04:28078011..28078035 (25 bp)
GAAGACGACACATCAGTCAGTCAAG
LOC_Os04g47700
Os.16987.1.S1_at--336--7591Chr04:28077627..28077651 (25 bp)
GGGCATTAATATTCGCGCTGGAGAT
LOC_Os04g47700
Os.16987.1.S1_at--104--3751Chr04:28077589..28077613 (25 bp)
CTCAATCCTTCTCGGCAATGGCAAA
LOC_Os04g47700
Os.16987.1.S1_at--935--1431Chr04:28077564..28077588 (25 bp)
AGAACTGCTGCGAAACACAAAGAAC
LOC_Os04g47700
Os.16987.1.S1_at--229--2971Chr04:28077520..28077544 (25 bp)
AATGGCACATACATGTACCTTCCCC
NONE
Os.16987.1.S1_at--1122--6111Chr04:28077485..28077509 (25 bp)
GAGTGTTCCTGTTCATTCAGTGCAG
NONE
Os.16987.1.S1_at--416--8611Chr04:28077397..28077421 (25 bp)
TGGTGAATTTCTTTCCCAGATGCGT
NONE
Os.16987.1.S1_at--333--10651Chr04:28077385..28077409 (25 bp)
TTCCCAGATGCGTTGGTAGCATGTA
NONE
Os.16987.1.S1_at--327--6891Chr04:28077363..28077387 (25 bp)
GTATAGTACCACTTGATAGTCATCA
NONE
Target Sequence 
ACACTTCCCAGGTCTAAGCAAACAGAAAATCAGCAAGGGATTCCAAAGCCTAAGAGAAAAGTTGAAGCCCAGGACAGAAG
AAAAGGTGAATTCAGGGNAATAGAAAACCTGAAGACGACACATCAGTCAGTCAAGTTGACCAGATAAAGATGAAATATGG
ATATGCAACNAATGATGACCCCANCTAGCCTACCNAAAATGATTGGGAACAAGCTGCAAGAGAATATAAAAAAGTTGGAG
GGCATTAATATTCGCGCTGGAGATATGGCCAANGGTGCTCAATCCTTCTCGGCAATGGCAAAAGAACTGCTGCGAAACAC
AAAGAACGAGAAGGCCACATCGTAGAAATGGCACATACATGTACCTTCCCCTCTNNCAGTTTTGAGTGTTCCTGTTCATT
CAGTGCAGTTCTTCTACCNCATGAAATAATTCTGTTGTAAATAATGATTGAGAATCACAGCAAGAATTTACTGGTGAATT
TCTTTCCCAGATGCGTTGGTAGCATGTATAGTACCACTTGATAGTCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis