Browse Element(s) Details


Os.16999.1.A1_at

Description gb:AK120631.1
DB_XREF= gi:37990254
TID=Os.16999.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16999 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153H08, full insert sequence.
FL= gb:AK120631.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2495011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24930Os.12007.1.S1_at11/113+14185785..14187966Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os03g24940Os.27135.1.A1_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940OsAffx.13012.1.S1_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940OsAffx.13012.1.S1_x_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940Os.48734.1.S1_s_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940Os.48734.1.S1_at4/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24950Os.16999.1.A1_at11/113+14212011..14214838expressed protein
LOC_Os03g24960Os.33624.3.S1_x_at10/113+14228001..14232343Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g24960OsAffx.25216.1.S1_x_at5/113+14228001..14232343Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g24970OsAffx.25217.2.S1_x_at11/113+14232597..14233688SWIM zinc finger family protein
LOC_Os03g24970OsAffx.29607.3.S1_x_at1/113+14232597..14233688SWIM zinc finger family protein
LOC_Os03g24970OsAffx.29607.5.S1_x_at1/113+14232597..14233688SWIM zinc finger family protein
LOC_Os03g24980OsAffx.25217.2.S1_x_at11/113+14234177..14237333SWIM zinc finger family protein
LOC_Os03g24990Os.33624.3.S1_x_at10/113+14237587..14241404Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g24990OsAffx.25216.1.S1_x_at5/113+14237587..14241404Ulp1 protease family, C-terminal catalytic domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16999.1.A1_at--467--10511Chr03:14214420..14214444 (25 bp)
TTCAAGTGGTAGATCCGCAAGACCT
LOC_Os03g24950
Os.16999.1.A1_at--960--8811Chr03:14214536..14214560 (25 bp)
TGATTCCCATCAAGTTACCACCAAT
LOC_Os03g24950
Os.16999.1.A1_at--178--3751Chr03:14214572..14214596 (25 bp)
CTCACCTTCAGTTTCATGCCAAAAG
LOC_Os03g24950
Os.16999.1.A1_at--604--391Chr03:14214587..14214611 (25 bp)
ATGCCAAAAGAACCTTACTCCCTCT
LOC_Os03g24950
Os.16999.1.A1_at--802--8331Chr03:14214620..14214644 (25 bp)
GGCTGCTGCTTATATACCCTGGATA
LOC_Os03g24950
Os.16999.1.A1_at--165--10371Chr03:14214658..14214682 (25 bp)
TTTTTAGCCCAGCACCGTACATTGT
LOC_Os03g24950
Os.16999.1.A1_at--1081--8731Chr03:14214680..14214704 (25 bp)
TGTCAACAACAAGGCTTCTCTCAAA
LOC_Os03g24950
Os.16999.1.A1_at--796--6031Chr03:14214717..14214741 (25 bp)
GAGATGCATCGTTGTTGCACTCTAA
LOC_Os03g24950
Os.16999.1.A1_at--456--6591Chr03:14214730..14214754 (25 bp)
GTTGCACTCTAACAAACCTTGGGTC
LOC_Os03g24950
Os.16999.1.A1_at--1076--1731Chr03:14214745..14214769 (25 bp)
ACCTTGGGTCATAAGTGGCTTGTTC
LOC_Os03g24950
Os.16999.1.A1_at--638--7531Chr03:14214759..14214783 (25 bp)
GTGGCTTGTTCCAATGCTTGTCAAA
LOC_Os03g24950
Target Sequence 
TTCAAGTGGTAGATCCGCAAGACCTGCCGAAGCAAAGGAACCGAAACCTACAACCNAGTTGCAAGCCAAGGAACAGCTCC
AGCAACAGCTTGCGGAATNGGCTAGGCATCCGTCGCTGATTCCCATCAAGTTACCACCAATGNTGGAAATTTCTCACCTT
CAGTTTCATGCCAAAAGAACCTTACTCCCTCTCACCGACTGGCTGCTGCTTATATACCCTGGATATTTATCGGTCANATT
TTTAGCCCAGCACCGTACATTGTCAACAACAAGGCTTCTCTCAAACAAAAATGTGTTGAGATGCATCGTTGTTGCACTCT
AACAAACCTTGGGTCATAAGTGGCTTGTTCCAATGCTTGTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16999.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis