Browse Element(s) Details


Os.17016.1.S1_at

Description gb:AK064570.1
DB_XREF= gi:32974588
TID=Os.17016.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-D08, full insert sequence.
FL= gb:AK064570.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3272010/11expressed protein
LOC_Os02g280741/11XRN 5'-3' exonuclease N-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32670Os.4618.1.S1_at11/111+18238384..18238990expressed protein
LOC_Os01g32680OsAffx.2133.1.S1_at11/111+18248999..18249478retrotransposon protein, putative, unclassified
LOC_Os01g32700OsAffx.29264.2.S1_at11/111+18254535..18256551transposon protein, putative, unclassified
LOC_Os01g32700OsAffx.17743.1.S1_at1/111+18254535..18256551transposon protein, putative, unclassified
LOC_Os01g32710OsAffx.2134.1.S1_at10/111+18259699..18261206hydroxyproline-rich glycoprotein family protein, putative
LOC_Os01g32720Os.17016.1.S1_at10/111+18262735..18273925expressed protein
LOC_Os01g32730Os.9779.1.S1_at11/111+18274599..18278510tetratricopeptide repeat, putative, expressed
LOC_Os01g32740OsAffx.11287.1.S1_at11/111+18283071..18283452hypothetical protein
LOC_Os01g32750Os.11636.1.S1_at11/111+18287711..18295390TATA box-binding protein-associated factor, putative, expressed
LOC_Os01g32760NANA1+18296539..18298530hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004534molecular_function5'-3' exoribonuclease activity
GO:0008409molecular_function5'-3' exonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17016.1.S1_at--857--1552Chr02:16621450..16621502 (25 bp)
AGCTCAGTTATGGACATGTACGCCC
LOC_Os02g28074
Os.17016.1.S1_at--378--3211Chr01:18273386..18273410 (25 bp)
CAAGTGCATCTGGAAGCTCGGTTAT
LOC_Os01g32720
Os.17016.1.S1_at--281--6991Chr01:18273474..18273498 (25 bp)
GTACCGACAGCTAGGCTCTTCTGGT
LOC_Os01g32720
Os.17016.1.S1_at--693--9391Chr01:18273510..18273534 (25 bp)
TCGTAGCTGACCACACTTCAGTTTA
LOC_Os01g32720
Os.17016.1.S1_at--336--9651Chr01:18273527..18273551 (25 bp)
TCAGTTTACCTGATCACCGTTTTGA
LOC_Os01g32720
Os.17016.1.S1_at--849--5271Chr01:18273550..18273574 (25 bp)
GAATGTCATTGACGGCTGATGCAGC
LOC_Os01g32720
Os.17016.1.S1_at--143--10371Chr01:18273587..18273611 (25 bp)
TTTTTCCTTCTGAGAGATCTGCTGC
LOC_Os01g32720
Os.17016.1.S1_at--317--8911NONE
TGAGAGATCTGCTGCCATGTTTTTT
NONE
Os.17016.1.S1_at--410--5951Chr01:18273693..18273717 (25 bp)
GAGCAAGATCCTAGCTTACTAATGT
LOC_Os01g32720
Os.17016.1.S1_at--20--7371Chr01:18273728..18273752 (25 bp)
GTGACCCTAGACTGACGAATGCCCA
LOC_Os01g32720
Os.17016.1.S1_at--904--4111Chr01:18273743..18273767 (25 bp)
CGAATGCCCAGATTCCAGTATGCTG
LOC_Os01g32720
Target Sequence 
AGCTCAGTTATGGACATGTACGCCCTNGNTCCAAGTGCATCTGGAAGCTCGGTTATGGACAAGTATGCTCCACCTNTAGA
GGATACAAACTACAGTGCACGAGGGGTTCCACAATACCCGTACCGACAGCTAGGCTCTTCTGGTGGGGGTTGGCCTCGTA
GCTGACCACACTTCAGTTTACCTGATCACCGTTTTGAATGTCATTGACGGCTGATGCAGCGCTTGCTTTTTTTTTTTTCC
TTCTGAGAGATCTGCTGCCATGTTTTTTNTGCGNTCCATTTGATGAATACTAAAGTGGATCNCTTGTACAGGAATAAAAA
TCTCNCCCTCCAAGAAAATGAGCAAGATCCTAGCTTACTAATGTAGTGTACNCTGTGACCCTAGACTGACGAATGCCCAG
ATTCCAGTATGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis