Browse Element(s) Details


Os.17033.1.S1_at

Description gb:AK101615.1
DB_XREF= gi:32986824
TID=Os.17033.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17033 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033052F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033052F07, full insert sequence.
FL= gb:AK101615.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3043011/11Nuclear transport factor 2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30410Os.55085.1.S1_at11/114+17962479..17966088hypothetical protein
LOC_Os04g30410OsAffx.14045.1.S1_at10/114+17962479..17966088hypothetical protein
LOC_Os04g30420OsAffx.3952.1.S1_s_at11/114+17981338..17984641Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os04g30420Os.51439.1.S1_at11/114+17981338..17984641Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os04g30420Os.51439.1.S1_x_at10/114+17981338..17984641Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os04g30430Os.17033.1.S1_at11/114+17984772..17989714Nuclear transport factor 2 domain containing protein, expressed
LOC_Os04g30440NANA4+17992641..17996530retrotransposon protein, putative, unclassified
LOC_Os04g30450OsAffx.14046.1.S1_at11/114+18003290..18006493Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os04g30460OsAffx.14047.1.S1_at11/114+18010562..18012575hypothetical protein
LOC_Os04g30470OsAffx.26253.1.S1_at11/114+18013500..18016665U-box domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006913biological_processnucleocytoplasmic transport
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17033.1.S1_at--127--7271Chr04:17985334..17985358 (25 bp)
TGCTCCTGGTAGAGGTGGTAACTTC
LOC_Os04g30430
Os.17033.1.S1_at--409--6071Chr04:17985249..17985273 (25 bp)
GAGTTCAATTATCGATCCGACTATG
LOC_Os04g30430
Os.17033.1.S1_at--232--4131Chr04:17985214..17985238 (25 bp)
CGCTGGTAGAGGTGGTTCATCACGT
LOC_Os04g30430
Os.17033.1.S1_at--550--8311Chr04:17985177..17985201 (25 bp)
GGCTACCAGCGGGTTGACCACTCTG
LOC_Os04g30430
Os.17033.1.S1_at--850--2011Chr04:17985123..17985147 (25 bp)
ACTAGTGCCGTTGCAAAGTGAGCGA
LOC_Os04g30430
Os.17033.1.S1_at--380--6071Chr04:17985100..17985124 (25 bp)
GAGTTAGTTGCTATGCCTCGGTTGC
LOC_Os04g30430
Os.17033.1.S1_at--630--4271Chr04:17985085..17985109 (25 bp)
CCTCGGTTGCTATGCGTCGGTGAAA
LOC_Os04g30430
Os.17033.1.S1_at--729--8991Chr04:17984957..17984981 (25 bp)
TGAAGCTTCCCTTGTTTTGTGGCAA
LOC_Os04g30430
Os.17033.1.S1_at--704--8751Chr04:17984901..17984925 (25 bp)
TGTAGCATATACGTCTATTCAGAAT
LOC_Os04g30430
Os.17033.1.S1_at--457--8471Chr04:17984853..17984877 (25 bp)
TGGCCCTTTTTGGAGTACCTGATGT
LOC_Os04g30430
Os.17033.1.S1_at--618--8691Chr04:17984809..17984833 (25 bp)
TGTCCCTCTTTTCTAGCAGGATCGA
LOC_Os04g30430
Target Sequence 
TGCTCCTGGTAGAGGTGGTAACTTCCGAGGTGAAGGCATGAGAGGCCGNGGGAATTACNCCGGAGGGAGGGGCTATGGAA
GGGNTGAGTTCAATTATCGATCCGACTATGGAGNCAGAGGCGCTGGTAGAGGTGGTTCATCACGTGGTGGTGATGTTGGC
TACCAGCGGGTTGACCACTCTGCTGGTCGTGCTGCTCGGGCGCCATCGGGCACTAGTGCCGTTGCAAAGTGAGCGAGTTA
GTTGCTATGCCTCGGTTGCTATGCGTCGGTGAAAAAGTTTGATATTTTCGTGGGTTGGAATTATCAACATTCGGGAAGAG
GGTATGTGTTGAGTTGGGTTTATGTGAGAGATTATCAGCAAAAATCGGGTCANAAATTGAAGCTTCCCTTGTTTTGTGGC
AAGGGAGAGCAGTGGTGATATTGGTTTACTAATTGTAGCATATACGTCTATTCAGAATTTCAGATGTAGTCCTGGTAAGC
TTGGCCCTTTTTGGAGTACCTGATGTTTGTTTTTCCCCCTCTTTTTGTCCCTCTTTTCTAGCAGGATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis