Browse Element(s) Details


Os.17046.1.S1_at

Description gb:AK120869.1
DB_XREF= gi:37990492
TID=Os.17046.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026A17, full insert sequence.
FL= gb:AK120869.1 gb:AK058976.1 gb:AK121281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1013011/11tubulin-specific chaperone C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10110OsAffx.12695.1.S1_at11/112+5270233..5276454Protein kinase domain containing protein, expressed
LOC_Os02g10120Os.15829.1.S1_at10/112+5276668..5282623Lipoxygenase 2.3, chloroplast precursor, putative, expressed
LOC_Os02g10130Os.17046.1.S1_at11/112+5297665..5306435tubulin-specific chaperone C, putative, expressed
LOC_Os02g10140OsAffx.24182.1.S1_at11/112+5315119..5318064Transcription factor HBP-1b, putative, expressed
LOC_Os02g10150OsAffx.2562.1.S1_at11/112+5321781..5322421hypothetical protein
LOC_Os02g10160Os.25152.1.S1_at11/112+5324567..5328285expressed protein
LOC_Os02g10170OsAffx.11969.1.S1_at11/112+5329016..5330521expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17046.1.S1_at--119--2451Chr02:5300239..5300263 (25 bp)
AAAATGCTGTCCTTTTCCATTGCCT
LOC_Os02g10130
Os.17046.1.S1_at--492--10091Chr02:5299682..5299706 (25 bp)
TAGGAGGACTATTCGGGAGCTGCAA
LOC_Os02g10130
Os.17046.1.S1_at--884--8211Chr02:5299637..5299661 (25 bp)
GGAATTGACAAATGCCCTCCATGCA
LOC_Os02g10130
Os.17046.1.S1_at--789--4531Chr02:5299624..5299648 (25 bp)
GCCCTCCATGCACAGTTCAAAGATT
LOC_Os02g10130
Os.17046.1.S1_at--188--271Chr02:5298028..5298048 (21 bp)
ATATGCTTCAGGCAACATCCGCCAG
LOC_Os02g10130
Os.17046.1.S1_at--263--5491Chr02:5297981..5298005 (25 bp)
GAACATGCGATCATCTGCTTTCATA
LOC_Os02g10130
Os.17046.1.S1_at--448--5831Chr02:5297929..5297953 (25 bp)
GACCGTGTCGGTTGAAGCTGACCTT
LOC_Os02g10130
Os.17046.1.S1_at--444--751Chr02:5297837..5297861 (25 bp)
ATGTATTTCTCCAATTCTTTTCCCA
LOC_Os02g10130
Os.17046.1.S1_at--544--10391Chr02:5297820..5297844 (25 bp)
TTTTCCCATTTGCTGTGGCGTCAGT
LOC_Os02g10130
Os.17046.1.S1_at--539--4651Chr02:5297803..5297827 (25 bp)
GCGTCAGTCGTTGGGATGTCATCTT
LOC_Os02g10130
Os.17046.1.S1_at--288--7751Chr02:5297764..5297788 (25 bp)
GGTGATTACACATTTTTGGCCCTTC
LOC_Os02g10130
Target Sequence 
AAAATGCTGTCCTTTTCCATTGCCTGAAATTTATTGTGCATCCCAGAGCAAAAAGCTTGCTGCACTGGAAGATATTAGGA
GGACTATTCGGGAGCTGCAAATTGATGACAATAGGAAGAAGGAATTGACAAATGCCCTCCATGCACAGTTCAAAGATTGG
TTATATGCTTCAGGCAACATCCGCCAGCTNTACTGCCTGCAAGGCGACTGAACATGCGATCATCTGCTTTCATAAAATGG
ACCTGTTTACTCAAAATATTCGACCGTGTCGGTTGAAGCTGACCTTACTCCCAGGTGCGAACCAATAATGTAAAAAAAAC
ATGTACTTCATCCTATTTCTGCAAAGTAGTTTGATGTATTTCTCCAATTCTTTTCCCATTTGCTGTGGCGTCAGTCGTTG
GGATGTCATCTTTCTTTTCATTTTCTGGTGATTACACATTTTTGGCCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis