Browse Element(s) Details


Os.17072.1.S1_at

Description gb:AK101138.1
DB_XREF= gi:32986347
TID=Os.17072.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17072 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033026K14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033026K14, full insert sequence.
FL= gb:AK101138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0619011/11ATPase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06130OsAffx.15282.1.S1_at10/116+2835447..2840617Receptor family ligand binding region containing protein
LOC_Os06g06140OsAffx.15283.1.S1_at11/116+2844575..2844820hypothetical protein
LOC_Os06g06150NANA6+2847748..2848341Zinc finger, C3HC4 type family protein
LOC_Os06g06160Os.10766.1.A1_at11/116+2854454..2858561calmodulin-binding family protein, putative, expressed
LOC_Os06g06170OsAffx.27469.1.S1_at11/116+2858872..2860407expressed protein
LOC_Os06g06180OsAffx.15284.1.S1_at11/116+2860701..2862180Transferase family protein, expressed
LOC_Os06g06190Os.17072.1.S1_at11/116+2862463..2866679ATPase, putative, expressed
LOC_Os06g06190Os.9035.1.S1_at1/116+2862463..2866679ATPase, putative, expressed
LOC_Os06g06200NANA6+2869178..2871701retrotransposon protein, putative, LINE subclass
LOC_Os06g06210Os.14672.1.S2_at11/116+2873385..2876068expressed protein
LOC_Os06g06210Os.14672.1.S1_at10/116+2873385..2876068expressed protein
LOC_Os06g06220OsAffx.4739.1.S1_at11/116+2876441..2876707hypothetical protein
LOC_Os06g06230OsAffx.15285.1.S1_at10/116+2882907..2883915GDSL-motif lipase/hydrolase family protein, putative
LOC_Os06g06240OsAffx.15286.1.S1_at11/116+2885336..2886343hypothetical protein
LOC_Os06g06240OsAffx.15286.1.S1_x_at11/116+2885336..2886343hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17072.1.S1_at--47--1471Chr06:2866133..2866157 (25 bp)
AGAAGGCGGCAAGTCTGTCAAGCAA
LOC_Os06g06190
Os.17072.1.S1_at--44--5911Chr06:2866170..2866194 (25 bp)
GAGCTCACAGATTCAGACAATTCAG
LOC_Os06g06190
Os.17072.1.S1_at--442--2151Chr06:2866211..2866235 (25 bp)
ACAGAACGGTGTCAGCAGGCTGCCT
LOC_Os06g06190
Os.17072.1.S1_at--11--1451Chr06:2866411..2866435 (25 bp)
AGAAGTACAGAATCGGTTCCGACTC
LOC_Os06g06190
Os.17072.1.S1_at--360--8951Chr06:2866455..2866479 (25 bp)
TGACGGCCTTCAGATGACTCACAGG
LOC_Os06g06190
Os.17072.1.S1_at--36--5711Chr06:2866470..2866494 (25 bp)
GACTCACAGGATCATTTTGGCAACT
LOC_Os06g06190
Os.17072.1.S1_at--355--10451Chr06:2866525..2866549 (25 bp)
TTAGTTGTTAGGCACATTCCCTCCT
LOC_Os06g06190
Os.17072.1.S1_at--2--10651Chr06:2866541..2866565 (25 bp)
TTCCCTCCTGGGATTATTATACAGC
LOC_Os06g06190
Os.17072.1.S1_at--837--2151Chr06:2866561..2866585 (25 bp)
ACAGCTCAAGCTGCGAGTTTGTAAA
LOC_Os06g06190
Os.17072.1.S1_at--417--1951Chr06:2866615..2866639 (25 bp)
ACTGGCCCAATCTTATATCGGTGTG
LOC_Os06g06190
Os.17072.1.S1_at--670--2472Chr06:2866646..2866670 (25 bp)
AACACATTTGGCTGCTGAGTTTCAG
LOC_Os06g06190
Target Sequence 
AGAAGGCGGCAAGTCTGTCAAGCAAGAAGCTGCAACTGAGCTCACAGATTCAGACAATTCAGATGACATGGACTATAAAC
AGAACGGTGTCAGCAGGCTGCCTTTCCTCCCAGANTANCACTCACTATCTTACCCTCCTGCTGTTCCTANCTGTATNNAT
NTCAATTCTTTTTCCAGTTTCNCACTTCCCTGGNTTGCTATTGATAACATGGTAACAACATCCATCAGAAAGTGGCTGTA
ATTTACAAAGTTGGATAGATAGTGCAGCATTACGCATACAGAAGTACAGAATCGGTTCCGACTCAGAAGTCAGAAATAAA
ACCTGACGGCCTTCAGATGACTCACAGGATCATTTTGGCAACTTTTGTGAGCTGGGGGTGATAAATACTGTCATTAGTTG
TTAGGCACATTCCCTCCTGGGATTATTATACAGCTCAAGCTGCGAGTTTGTAAATGCAATTAAAATGTTTGCCGACNCAT
GCTACTGGCCCAATCTTATATCGGTGTGGAATTAAACACATTTGGCTGCTGAGTTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis