Browse Element(s) Details


Os.17130.1.S1_at

Description gb:CB670040
DB_XREF= gi:29673765
DB_XREF=OSJNEe02O19.f
CLONE=OSJNEe02O19
TID=Os.17130.1
CNT=11
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17130 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T02575 (A.thaliana) T02575 adenylate kinase homolog T16B24.9 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5754011/11Adenylate kinase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57510Os.11868.3.S1_x_at11/114+33990592..33995732Exostosin family protein, expressed
LOC_Os04g57510Os.11868.2.S1_at11/114+33990592..33995732Exostosin family protein, expressed
LOC_Os04g57510OsAffx.988.1.S1_at1/114+33990592..33995732Exostosin family protein, expressed
LOC_Os04g57520Os.49659.1.S1_at11/114+33996762..34003309expressed protein
LOC_Os04g57530NANA4+34012126..34014305expressed protein
LOC_Os04g57540Os.17130.1.S1_at11/114+34017343..34019799Adenylate kinase, chloroplast precursor, putative, expressed
LOC_Os04g57550Os.11407.1.S1_at11/114+34020761..34024119amine oxidase, flavin-containing family protein, expressed
LOC_Os04g57560Os.10617.1.S1_at11/114+34025190..34029263amine oxidase, flavin-containing family protein, expressed
LOC_Os04g57570Os.28346.5.S1_at11/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.5.S1_x_at10/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.3.S1_x_at10/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.4.S1_x_at8/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.1.S1_x_at5/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.1.S1_at1/114+34033348..34044339retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008652biological_processamino acid biosynthesis
GO:0048364biological_processroot development
GO:0048367biological_processshoot development
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0004017molecular_functionadenylate kinase activity
GO:0019201molecular_functionnucleotide kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17130.1.S1_at--6--6471Chr04:34018240..34018264 (25 bp)
GATAACTAGGCCTGATGATACTGAA
LOC_Os04g57540
Os.17130.1.S1_at--458--8091Chr04:34018204..34018228 (25 bp)
GGAGCGATTGCGTGTTTATCATGAT
LOC_Os04g57540
Os.17130.1.S1_at--821--951Chr04:34017813..34017837 (25 bp)
AGGACTTCTACAGAGCACGTGGTAA
LOC_Os04g57540
Os.17130.1.S1_at--200--6751Chr04:34017779..34017803 (25 bp)
GTTCAATCTACCAGGAGGAATTCCA
LOC_Os04g57540
Os.17130.1.S1_at--691--9631Chr04:34017751..34017775 (25 bp)
TCATGGCCGAAGTTACTGCAAGCAT
LOC_Os04g57540
Os.17130.1.S1_at--330--3231Chr04:34017733..34017757 (25 bp)
CAAGCATTGAATTTAGACCCTGGCA
LOC_Os04g57540
Os.17130.1.S1_at--789--10111Chr04:34017663..34017687 (25 bp)
TATGTATTTGTAGCCCTACGCCAGA
LOC_Os04g57540
Os.17130.1.S1_at--1032--6071Chr04:34017624..34017648 (25 bp)
GAGTATTCCTTGTACCTCTAGAAGT
LOC_Os04g57540
Os.17130.1.S1_at--1150--391Chr04:34017542..34017566 (25 bp)
ATCATCGATCTTGCATGATGCCATG
LOC_Os04g57540
Os.17130.1.S1_at--781--4051Chr04:34017515..34017539 (25 bp)
CGATGAGTGTGCTGGTTGTTATTCT
LOC_Os04g57540
Os.17130.1.S1_at--566--171Chr04:34017394..34017418 (25 bp)
ATTTTCCTTGCAACTATGCCTGTTT
LOC_Os04g57540
Target Sequence 
GATAACTAGGCCTGATGATACTGAAGAGGTGGTAAAGGAGCGATTGCGTGTTTATCATGATTTGTGTGAGCCAGTGGAGG
ACTTCTACAGAGCACGTGGTAAACTATTGGAGTTCAATCTACCAGGAGGAATTCCAGAATCATGGCCGAAGTTACTGCAA
GCATTGAATTTAGACCCTGGCANATGAAAGATCTGCAGCAGCATGATTTTTGCTTTAGGAATGTTCGTTATGTATTTGTA
GCCCTACGCCAGAAGTAGTTAAGTAATGAGTATTCCTTGTACCTCTAGAAGTAGTTCAATCGGGTTACCAAAATTATATT
GATATAGCACTCAATTGTATAGGTGATTCATCATCGATCTTGCATGATGCCATGATCGATGAGTGTGCTGGTTGTTATTC
TTAAATGAGAAAGCTTCCAATAAACCAATACACATTTATTTGTAGCCAACTATGCTTGTTGAAAGCAACACAAGGCAAGC
CTTGTGATGACAGTAATATTTTCCTTGCAACTATGCCTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis