Browse Element(s) Details


Os.17133.1.S1_at

Description gb:CA758983
DB_XREF= gi:25803022
DB_XREF=BR060005A20G10.ab1
CLONE=BR060005A20G10.ab1
TID=Os.17133.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17133 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_174332.1 (A.thaliana) non-phototropic hypocotyl, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4399011/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43960OsAffx.3507.1.S1_at8/113+24640233..24641073hypothetical protein
LOC_Os03g43970NANA3+24647394..24648828Amino acid permease family protein, expressed
LOC_Os03g43980OsAffx.25529.1.S1_at11/113+24651053..24652359amino acid permease family protein, putative
LOC_Os03g43990Os.17133.1.S1_at11/113+24655379..24660825transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g43990Os.53644.1.S1_at11/113+24655379..24660825transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g44000Os.51224.1.S1_at10/113+24675429..24677340expressed protein
LOC_Os03g44010OsAffx.25530.1.S1_s_at11/113+24681594..24686517expressed protein
LOC_Os03g44010Os.11590.1.S2_at10/113+24681594..24686517expressed protein
LOC_Os03g44010Os.11590.1.S1_at10/113+24681594..24686517expressed protein
LOC_Os03g44010OsAffx.25530.1.S1_at4/113+24681594..24686517expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17133.1.S1_at--801--991Chr03:24655932..24655956 (25 bp)
AGGATGCGCTTGTCTGAGCTCGAGA
LOC_Os03g43990
Os.17133.1.S1_at--564--2271Chr03:24655809..24655833 (25 bp)
AAATCGCAGATGTGCAGTGCCCAGG
LOC_Os03g43990
Os.17133.1.S1_at--669--6131Chr03:24655785..24655809 (25 bp)
GAGGGATCAGTCAGCGAGCAGCACA
LOC_Os03g43990
Os.17133.1.S1_at--986--8031Chr03:24655695..24655719 (25 bp)
GGAGATGCCTGAATCCTCTGAACCT
LOC_Os03g43990
Os.17133.1.S1_at--734--8971Chr03:24655677..24655701 (25 bp)
TGAACCTCGGTTCGCTTGTAATTTT
LOC_Os03g43990
Os.17133.1.S1_at--642--10331Chr03:24655632..24655656 (25 bp)
TTTAACTTCTTCCATGTTCCTACTA
LOC_Os03g43990
Os.17133.1.S1_at--787--9231Chr03:24655622..24655646 (25 bp)
TCCATGTTCCTACTAGCTCTTTTAG
LOC_Os03g43990
Os.17133.1.S1_at--641--10071Chr03:24655579..24655603 (25 bp)
TAGTGGTCTCTGAATCCCTTAAGGT
LOC_Os03g43990
Os.17133.1.S1_at--538--2511Chr03:24655552..24655576 (25 bp)
AACATTTGCGATGCTTTGAGTGCTA
LOC_Os03g43990
Os.17133.1.S1_at--631--5731Chr03:24655477..24655501 (25 bp)
GACTGGTGTTTAGTGCAACTGTACA
LOC_Os03g43990
Os.17133.1.S1_at--1030--8811Chr03:24655407..24655431 (25 bp)
TGATGTTTCCCTGTACCAATGGTTT
LOC_Os03g43990
Target Sequence 
AGGATGCGCTTGTCTGAGCTCGAGAAGGAGTGCTCAACCATGAGGCAGGAGATCCAANAGCTGGGGCGTGGCAAGANCGG
TGGGTGGGCTTCCCGCGTCCCCAAGAAGTTCAACCTGAAGCTGAAATCGCAGATGTGCAGTGCCCAGGAGGGATCAGTCA
GCGAGCAGCACAAGAGCATGAGCGCGAAGCTCGACAAGCTGCAAGCCAAGGTATCAAGGCNAAAGAAGCAGCTTGCAGGA
GATGCCTGAATCCTCTGAACCTCGGTTCGCTTGTAATTTTAGCCCGGTGTTAAATTGCTTTTTAACTTCTTCCATGTTCC
TACTAGCTCTTTTAGGTTAAAATGCGTGGAGTGTAGTGGTCTCTGAATCCCTTAAGGTTGAACATTTGCGATGCTTTGAG
TGCTAGTGAGAGTGAAAATGTGTAGGTAAGAAATGAGGATCTGATGTTCTCTTTTGACTGGTGTTTAGTGCAACTGTACA
AGTGATGATCAGTTCATAGCTGTAAGAGACTTCATCTGTAACTTATGATGTTTCCCTGTACCAATGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis