Browse Element(s) Details


Os.17164.1.S1_s_at

Description gb:AK061527.1
DB_XREF= gi:32971545
TID=Os.17164.1
CNT=10
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.17164 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-212-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D10, full insert sequence.
FL= gb:AK099017.1 gb:AK061527.1 gb:AK119210.1 gb:AK104452.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3297011/11hydrolase, alpha/beta fold family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32950NANA2+19561764..19562928SELF-PRUNING protein, putative, expressed
LOC_Os02g32960OsAffx.28970.3.S1_x_at11/112+19578621..19579323hypothetical protein
LOC_Os02g32960OsAffx.28970.4.S1_at7/112+19578621..19579323hypothetical protein
LOC_Os02g32960OsAffx.28970.1.S1_x_at2/112+19578621..19579323hypothetical protein
LOC_Os02g32960OsAffx.28970.1.S1_at1/112+19578621..19579323hypothetical protein
LOC_Os02g32970Os.55369.1.S1_at11/112+19585409..19589654hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os02g32970Os.17164.1.S1_s_at11/112+19585409..19589654hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os02g32980Os.50966.1.S1_at11/112+19591678..19592747Germin-like protein subfamily 3 member 2 precursor, putative, expressed
LOC_Os02g32990NANA2+19608212..19609204expressed protein
LOC_Os02g33000Os.53440.1.S1_at10/112+19613375..19617976Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17164.1.S1_s_at--53--8551Chr02:19589252..19589276 (25 bp)
TGGAGATGGAGAACCCGTTCCCGGC
LOC_Os02g32970
Os.17164.1.S1_s_at--972--1611Chr02:19589333..19589357 (25 bp)
AGCTGTCGCGGCACATCGCGCAGCG
LOC_Os02g32970
Os.17164.1.S1_s_at--1093--8091Chr02:19589427..19589451 (25 bp)
GGACCTCATCGTCAGGTCGATGCTG
LOC_Os02g32970
Os.17164.1.S1_s_at--823--4051Chr02:19589444..19589468 (25 bp)
CGATGCTGCTCACCGACGAGTGAGA
LOC_Os02g32970
Os.17164.1.S1_s_at--765--1791Chr02:19589455..19589479 (25 bp)
ACCGACGAGTGAGATCACCGACCGA
LOC_Os02g32970
Os.17164.1.S1_s_at--399--1791Chr02:19589483..19589507 (25 bp)
ACCGAGACGCGCATCTCTCTGTTTT
LOC_Os02g32970
Os.17164.1.S1_s_at--192--10791Chr02:19589517..19589541 (25 bp)
TTGGAATTTTGGGTACTGTCACGTA
LOC_Os02g32970
Os.17164.1.S1_s_at--683--8711Chr02:19589525..19589549 (25 bp)
TTGGGTACTGTCACGTACCGACGTA
LOC_Os02g32970
Os.17164.1.S1_s_at--237--9951Chr02:19589540..19589564 (25 bp)
TACCGACGTACGGTGGTACGCGTAG
LOC_Os02g32970
Os.17164.1.S1_s_at--335--9951Chr02:19589556..19589580 (25 bp)
TACGCGTAGTTGCTTGCTCCTATTA
LOC_Os02g32970
Os.17164.1.S1_s_at--622--10711Chr02:19589569..19589593 (25 bp)
TTGCTCCTATTATCCTATCCTATAT
LOC_Os02g32970
Target Sequence 
TGGAGATGGAGAACCCGTTCCCGGCGGGCGAGGCGGCGGTGCACCTGTGGCACGGCGCGGAGGACCTCATCGTGCCCGTG
CAGCTGTCGCGGCACATCGCGCAGCGGCTGCCGTGGGTGCGGTACCACGAGCTGCCCACGGCGGGCCACCTGTTCCCCAT
CACCGAAGGGATGCCGGACCTCATCGTCAGGTCGATGCTGCTCACCGACGAGTGAGATCACCGACCGACCGACCGAGACG
CGCATCTCTCTGTTTTTTTTGGTTTTTGGAATTTTGGGTACTGTCACGTACCGACGTACGGTGGTACGCGTAGTTGCTTG
CTCCTATTATCCTATCCTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17164.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis